Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0340 ATGGACAGAGAATCGCCAGCCTCTTCTTCATCAACAACTACGAGGGCAATGACCAGCAACAATCTCCCACCACCCGAAGATGCTTGGCTTGATACCTGCCAGAAGTTACTGCCTCGTTGGGAATCTCACTCCCTTTCTCATCAGTCAATAATTCCTATTTCTATATCAAGAGTTAACCAAGTTGATGCTGCTAGACTGGATGTTGAAATGTCAGCCATGTTGAAGGAACAGTTGGTTAAAGTGTTCTCTTTAATGAAGCCAGGAATGTTATTTCAGTACGGAGCTGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGATTCTCAATTTGGGTTGATAAGCCAACTCCAGGCATTGCTCTCATGAACCTGAGGTATAGAGATGAGCGTGCAATTGAACCGAGAGAAAAAGTCAGAACTGGTCTTGAGGGTCCTGGACTCACTGTTGCTCAGAAGATTTGGTATTGTATTGCAACTGTTGGTGGTCAGTATATCTGGGCCCGCATACAATCCTTTTCTGCTTTTCGTCGGTGGGGTGATTCTGATCAGAGGTCACTGGCACGCTGGGTATGGATCCTTATACAACGTATAGAAGGAATTTATAGAGCTGCTTCATTTGGCAACCTGTTGATATTTCTTTGTACTGGAAGATATAGAAATATCATTGAAAGAGCTTTACGAGCTAGGCTTGTCTATGGGAGCCCGAATATGAATCGTGCTGTTAGCTTTGAGTACATGAACAGGCAGTTAGTTTGGAATGAATTCTCGGAAATGTTGCTGTTGCTTCTTCCTCTTCTTAATTCATCGTCTATGAGAAATCTCCTTCGACCATTTTCGAAGGATAAATCCTCAAGTTCAGATCAGGATGACAACACGTGCCCCATTTGTCGATCTACTCCAATCATTCCTTTTATTGCTCTCCCTTGTCAACACAGATATTGTTACTACTGTCTTCGAACACGCTGTGCCGCCGCTCCATCATTTAGATGTTCCAGGTGTAGTGAGCCAGTCGCCGCTATGCAGCGGCATAGTGGTGGTGTCACCAATGGATGA 1053 0.4397 MDRESPASSSSTTTRAMTSNNLPPPEDAWLDTCQKLLPRWESHSLSHQSIIPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYGAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAIEPREKVRTGLEGPGLTVAQKIWYCIATVGGQYIWARIQSFSAFRRWGDSDQRSLARWVWILIQRIEGIYRAASFGNLLIFLCTGRYRNIIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSMRNLLRPFSKDKSSSSDQDDNTCPICRSTPIIPFIALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVAAMQRHSGGVTNG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0340 350 Pfam Pex2 / Pex12 amino terminal region 67 271 IPR006845 -
Lele40g0340 350 CDD RING-HC_PEX2 292 334 - -
Lele40g0340 350 ProSitePatterns Zinc finger RING-type signature. 309 318 IPR017907 -
Lele40g0340 350 MobiDBLite consensus disorder prediction 1 21 - -
Lele40g0340 350 PANTHER PEROXISOME BIOGENESIS FACTOR 2 18 348 - -
Lele40g0340 350 SUPERFAMILY RING/U-box 286 338 - -
Lele40g0340 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Lele40g0340 350 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Lele40g0340 350 MobiDBLite consensus disorder prediction 1 26 - -
Lele40g0340 350 Pfam Zinc finger, C3HC4 type (RING finger) 293 333 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0340 Lele-ChrLele40 2807245 2809907 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0340 40 2807245 2809907 Lele40g0340 40 2807245 2809907 ECH
Lele37g0384 37 3216003 3218629 Lele40g0340 40 2807245 2809907 hybridization
Lele38g0362 38 2950124 2952784 Lele40g0340 40 2807245 2809907 hybridization