Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0384 ATGGACAGAGAATCGCCAGCCTCTTCTTCTTCTTCTTCATCATCATCAACAACAAGGGCAATGACCAGCAACAATCTCCCACCACCCGAAGATGCTTGGCTTGATACTTGCCACAAGTTGCTGCCTCGTTGGGAATCTCATTCCCTTTCTCATCAGTCAATGATTCCTATTTCTATATCAAGAGTTAACCAAGTTGATGCTGCTAGACTGGATGTTGAAATGTCAGCCATGTTGAAGGAACAGTTGGTTAAAGTGTTCTCTTTAATGAAGCCAGGAATGTTATTTCAGTACGAAGCTGAGCTTGATGCATTCCTTGAGTTTCTTATTTGGAGATTCTCAATTTGGGTTGATAAGCCAACTCCAGGCATTGCTCTCATGAACCTGAGGTATAGAGATGAGCGTGCAATTGAACCAAGAGAAAAAGTCAGAACTGGTCTTGAGGGTCCTGGACTCACTGTTGCTCAGAAGATTTGGTATTGTATTGCAACTGTTGGTGGTCAGTATATCTGGGCCCGCATTCAATCCTTTTCTGCTTTTCGTCGGTGGGGTGATTCTGATCAGAGGTCACTGGCACGCCGGGTATGGATCCTTATACAACGTATAGAAGGAATTTATAGAGCTGCTTCATTTGGCAACCTGTTGATATTTCTTTATACTGGAAGATATAGAAATCTCATTGAAAGAGCTTTACGAGCTAGACTTGTCTATGGGAGCCAGAATATGACTCGTGCTGTTAGCTTTGAGTATATGAACCGGCAGTTAGTTTGGAATGAATTCTCGGAAATGTTGCTGTTGCTTCTTCCTCTTCTTAATTCATCGTCTATGAGAAATCTCCTTCGACCATTTTCGAAGGATAAATCCTCAAGTTCAGATCAGGATGACAACACGTGCCCCATTTGTCGGTCTACTCCAACCATTCCTTTTGTTGCTCTCCCTTGTCAGCACAGATATTGTTACTATTGTCTTCGAACACGCTGTGCCGCTGCTCCATCATTTAGGTGTTCCAGGTGTAGTGAGCCAGTCGCCGCTATGCAGCGGCACAGTGGTGGTGTCACCAATGGATGA 1065 0.4394 MDRESPASSSSSSSSSTTRAMTSNNLPPPEDAWLDTCHKLLPRWESHSLSHQSMIPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAIEPREKVRTGLEGPGLTVAQKIWYCIATVGGQYIWARIQSFSAFRRWGDSDQRSLARRVWILIQRIEGIYRAASFGNLLIFLYTGRYRNLIERALRARLVYGSQNMTRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSMRNLLRPFSKDKSSSSDQDDNTCPICRSTPTIPFVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVAAMQRHSGGVTNG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0384 354 MobiDBLite consensus disorder prediction 1 30 - -
Lele37g0384 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 352 IPR013083 -
Lele37g0384 354 CDD RING-HC_PEX2 296 338 - -
Lele37g0384 354 Pfam Pex2 / Pex12 amino terminal region 71 275 IPR006845 -
Lele37g0384 354 SUPERFAMILY RING/U-box 290 342 - -
Lele37g0384 354 PANTHER PEROXISOME BIOGENESIS FACTOR 2 22 352 - -
Lele37g0384 354 ProSitePatterns Zinc finger RING-type signature. 313 322 IPR017907 -
Lele37g0384 354 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Lele37g0384 354 Pfam Zinc finger, C3HC4 type (RING finger) 297 337 IPR018957 GO:0046872
Lele37g0384 354 SMART ring_2 297 337 IPR001841 -
Lele37g0384 354 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0384 Lele-ChrLele37 3216003 3218629 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0384 37 3216003 3218629 Lele37g0384 37 3216003 3218629 ECH
Lele37g0384 37 3216003 3218629 Lele39g1044 39 19081903 19084577 hybridization
Lele37g0384 37 3216003 3218629 Lele40g0340 40 2807245 2809907 hybridization