Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0362 ATGGACAGAGGATCGCCAGCCTCTTCTTCTTCTTCATCAACAACTACGAGGGCAATGACCAGCAACAATCTTCCACCACCCCAAGATGCTTGGCTTGATACCTGCCACAAGTTACTGCCTCGTTGGGAATCTCACTCCCTTTCTCATCAGTCAATAATTCCTATTTCTATATCAAGAGTTAACCAAGTTGATGCAGCTAGACTGGATGTTGAAATGTCAGCCATGTTGAAGGAACAGCTGGTTAAAGTGTTCTCTTTAATGAAGCCAGGAATGTTATTTCAGTACGGAGCTGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGATTCTCAATTTGGGTTGATAAGCCAACTCCAGGCATTGCTCTCATGAACCTGAGGTATAGAGATGAGCGTGCAATTGAACCGAGAGAAAAAGTCAGAACTGGTCTTGAGGGTCCTGGACTCACTGTTGCTCAGAAGATTTGGTATTGTATTGCAACTGTTGGTGGTCAGTATATCTGGGCCCGTATACAATCCTTTTCCGCTTTTCGTCGATGGGGTGATTCTGATCAGAGGTCACTGGCACGCCGGCTATGGATCCTTATACAACGTATAGAAGGAATTTATAGAGCTGCTTCATTTGGCAACCTGTTGATATTTCTTTGTACTGGAAGATATAGAAATCTCATTGAAAGAGCTTTACGAGCTAGGCTTGTCTATGGGAGCCCGAATATGAATCGTGCTGTTAGCTTTGAGTATATGAACAGGCAGTTAGTTTGGAATGAATTCTCGGAAATGTTGCTGTTGCTTCTTCCTCTTCTTAATTCATCGTCTGTGAGAAACCTCCTTCGACCCTTTTTGAAGGATAAATCCTCAAGTTCAGATCAGGATGACAACACGTGCCCCATTTGTCGATCTACTCCAACCATTCCTTTTATTGCTCTACCTTGTCAACACAGATATTGTTACTACTGTCTTCGAACACGCTGTGCCGCTGCTCCATCATTTAGATGTTCCAGGTGTAGTGAGCCAGTGGCCGCTATGCAGCGGCATAGTGGGGGTGTCACCAATGGATGA 1059 0.4419 MDRGSPASSSSSSTTTRAMTSNNLPPPQDAWLDTCHKLLPRWESHSLSHQSIIPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYGAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAIEPREKVRTGLEGPGLTVAQKIWYCIATVGGQYIWARIQSFSAFRRWGDSDQRSLARRLWILIQRIEGIYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVRNLLRPFLKDKSSSSDQDDNTCPICRSTPTIPFIALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVAAMQRHSGGVTNG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0362 352 Pfam Zinc finger, C3HC4 type (RING finger) 295 335 IPR018957 GO:0046872
Lele38g0362 352 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Lele38g0362 352 ProSitePatterns Zinc finger RING-type signature. 311 320 IPR017907 -
Lele38g0362 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 350 IPR013083 -
Lele38g0362 352 SUPERFAMILY RING/U-box 288 340 - -
Lele38g0362 352 MobiDBLite consensus disorder prediction 1 28 - -
Lele38g0362 352 CDD RING-HC_PEX2 294 336 - -
Lele38g0362 352 Pfam Pex2 / Pex12 amino terminal region 69 273 IPR006845 -
Lele38g0362 352 PANTHER PEROXISOME BIOGENESIS FACTOR 2 20 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0362 Lele-ChrLele38 2950124 2952784 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0362 38 2950124 2952784 Lele38g0362 38 2950124 2952784 ECH
Lele38g0362 38 2950124 2952784 Lele39g1044 39 19081903 19084577 hybridization
Lele38g0362 38 2950124 2952784 Lele40g0340 40 2807245 2809907 hybridization