Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0329 ATGGGTACTGAGCAGAAACCACCAGAGGAGGAGAAAGTGGTGGTGCTGGAGAATGGCACAATGAACGGCTCACTCGCCGGACCTTCCGCCGGGATCCGATGGAAAACTGACGCGATGCACTTGATTCTGAGGCTGTTATGCATGGTCAGTTCAGTGATCGCGCTTTTGTTCATGGTGACGGCCAAGCAAGCTAGCTCTATCTCCATATATGGCTTTCACTTTCCGGTTTACTCCAAGTGGTCCTACGCTGAGTCGTTCGAATATCTTGTTGGTGTTTCTGCTGCTGTTTCGGCTCACTCCTTGCTGCAGCTACTCATAGGCGCATCACGGTTTCTAAAGAAGTCTCCTGTGATTCCCTCAAGAAATTTCGCATGGCTTATATTTGCTGGGGATCAGGCATTTGCTTATGCACTGATAAGTGCTGGATCTGCTGCATCAGGAGCGACCAATCTGAAGCACAATGGAATAAGACATCCAGCTCTGCCAAGTTTCTGTAAGCCCCTCCATAAGTTCTGTGACCATGTAGGCATCTCAATAGCCTTCACTTTCATAGCCTGTTTGCTGCTCGCTGCTTCTGCTATCCTGGATGTCATGTGGCTCTCTATCCACTAG 612 0.4935 MGTEQKPPEEEKVVVLENGTMNGSLAGPSAGIRWKTDAMHLILRLLCMVSSVIALLFMVTAKQASSISIYGFHFPVYSKWSYAESFEYLVGVSAAVSAHSLLQLLIGASRFLKKSPVIPSRNFAWLIFAGDQAFAYALISAGSAASGATNLKHNGIRHPALPSFCKPLHKFCDHVGISIAFTFIACLLLAASAILDVMWLSIH 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0329 203 Pfam Casparian strip membrane protein domain 37 188 IPR006702 -
Lele40g0329 203 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 41 196 IPR006459 -
Lele40g0329 203 PANTHER CASP-LIKE PROTEIN 4A4 33 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0329 Lele-ChrLele40 2705934 2708500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0329 35 203 Miscellaneous Gene Families AT3G16300 49.112 7.19e-49 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0329 40 2705934 2708500 Lele40g0329 40 2705934 2708500 ECH
Lele37g0373 37 3128561 3131356 Lele40g0329 40 2705934 2708500 hybridization
Lele38g0350 38 2840038 2843435 Lele40g0329 40 2705934 2708500 hybridization