Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0373 ATGGTCACTGAACAAAAACCATCAGAGGAGGAGAAGGTGGTGGTGCTGCAGGAGAATGGCACAATGAACGGCTCACTCGCCGGACCTTCCGCCGGGATCCGATGGAAACCTGATGCGTTGCACTTGATTCTGAGGCTGTTGTGCATGGTTAGTTCAGTGATCGCGCTTTCGTTCATGGTAACTGCCCAGCAAGCTAGCTCTATCTCCATTTATAGCTTTCACTTTCCGGTTTACTCCAAGTGGTCATACGCTGAATCGTTCGAATATCTTGTTGGTGTTTCTGCTGCGGTTTCTTCTCACTCCTTGCTGCAGCTACTCATTGGAACATCAAGGTTTCTAAAGAAATCTCCTGTGATTCCCTCAAGAAATTTCGCATGGCTTATATTTGCAGGGGATCAGGCATTTGCTTATGCACTGATAAGTGCAGGGTCTGCTGCATCAGGAGTGACCAATCTGAAGCACAATGGAATTAGACATCCAGCTCTGCCAAGTTTCTGTAAGCCCCTCCATAAGTTCTGTGACCATGTAGGCATCTCAATAGCCTTCACTTTCATAGGCTGTTTGATGCTCGCTGCTTCTGCTATCCTGGATGTAATGTGGCTCTCTAACCACTAG 615 0.4748 MVTEQKPSEEEKVVVLQENGTMNGSLAGPSAGIRWKPDALHLILRLLCMVSSVIALSFMVTAQQASSISIYSFHFPVYSKWSYAESFEYLVGVSAAVSSHSLLQLLIGTSRFLKKSPVIPSRNFAWLIFAGDQAFAYALISAGSAASGVTNLKHNGIRHPALPSFCKPLHKFCDHVGISIAFTFIGCLMLAASAILDVMWLSNH 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0373 204 Pfam Casparian strip membrane protein domain 39 188 IPR006702 -
Lele37g0373 204 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 42 197 IPR006459 -
Lele37g0373 204 PANTHER CASP-LIKE PROTEIN 4A4 39 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0373 Lele-ChrLele37 3128561 3131356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0373 36 204 Miscellaneous Gene Families AT3G16300 47.929 2.68e-48 155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0373 37 3128561 3131356 Lele37g0373 37 3128561 3131356 ECH
Lele37g0373 37 3128561 3131356 Lele39g1054 39 19164356 19167449 hybridization
Lele37g0373 37 3128561 3131356 Lele40g0329 40 2705934 2708500 hybridization