Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0350 ATGGTTACTGAGCAAAAACCACTAGAGGAGGAGAAAGTGGTGGTGCTGGAGAACGGCACAATGAACGGCTCACTCGCCGGACCTTCAGCCGGGATCCGATGGAAAACTGACGCGATGCCCTTGATTCTGAGGCTGTTATGCATGGTCACTCGTTTTGACGAGACTGCCATTGGATTTGGCGCTTCGAAATATCTTGTTGGTGTTTCTGCTGCTGTTTCGGCTCACTCCTTGCTGCAGCTACTCATTGGCACATCACGTTTTCTAAGAAAATCTCCTGTGATTTCCTCGAGAAATTTCGCATGGCTTATATTTGCTGGGGATCAGGCATTTGCTTATGCACTGATAAGTGCTGGATCTGCTGCATCAGGAGTGACCAATCTGAAGCACAATGGAATAAGACATCCAGCTCTGCCAAGTTTCTGTAAGCCCCTCCATAAGTTCTGTGACCATGTAGGCATCTCAATAGCCTTCACTTTTATAGCCTGTTTGCTGCTCGCTGTTTCTGCTATCCTGGATGTCATGTGGCTGTCTATCCACTAG 540 0.4796 MVTEQKPLEEEKVVVLENGTMNGSLAGPSAGIRWKTDAMPLILRLLCMVTRFDETAIGFGASKYLVGVSAAVSAHSLLQLLIGTSRFLRKSPVISSRNFAWLIFAGDQAFAYALISAGSAASGVTNLKHNGIRHPALPSFCKPLHKFCDHVGISIAFTFIACLLLAVSAILDVMWLSIH 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0350 179 PANTHER CASP-LIKE PROTEIN 4A4 63 176 - -
Lele38g0350 179 Pfam Casparian strip membrane protein domain 63 164 IPR006702 -
Lele38g0350 179 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 61 173 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0350 Lele-ChrLele38 2840038 2843435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0350 64 179 Miscellaneous Gene Families AT3G16300 55.172 3.21e-31 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0350 38 2840038 2843435 Lele38g0350 38 2840038 2843435 ECH
Lele38g0350 38 2840038 2843435 Lele39g1054 39 19164356 19167449 hybridization
Lele38g0350 38 2840038 2843435 Lele40g0329 40 2705934 2708500 hybridization