Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0208 ATGTCCTGGGCAGGCCCTGAGGATGTTTATCTTTCCACTTCACTCGCTAGTTATCTTGACAAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAGCTACTGGGAACACTTCGCTCTTTTGATCAATTTGCTAATGCTGTTCTTGAGGGAGCTTGTGAGAGGGTTATTGTTGGTGAACTGTATTGCGATATCCCTTTGGGGCTCTATGTAATCCGTGGGGAGAATGTTGTTTTGATTGGTGAGCTGGACTTGGAAAAAGAGGAACTTCCCCCACACATGACACGTGTTTCAACTGCAGAAATTAGAAGGGCACAGAAAGCAGAAAGGGAGGCTACAGATCTGAAGGGAACAATGAGGAGGAGGATGGAGTTCCTGGACTTGGACTAG 387 0.4574 MSWAGPEDVYLSTSLASYLDKKLLVLLRDGRKLLGTLRSFDQFANAVLEGACERVIVGELYCDIPLGLYVIRGENVVLIGELDLEKEELPPHMTRVSTAEIRRAQKAEREATDLKGTMRRRMEFLDLD 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0208 128 SMART Sm3 13 81 IPR001163 -
Lele40g0208 128 Pfam LSM domain 14 80 IPR001163 -
Lele40g0208 128 CDD LSm1 12 82 IPR034104 GO:0000956
Lele40g0208 128 Gene3D - 12 125 - -
Lele40g0208 128 SUPERFAMILY Sm-like ribonucleoproteins 13 85 IPR010920 -
Lele40g0208 128 PANTHER LSM1 8 122 IPR044642 -
Lele40g0208 128 FunFam U6 snRNA-associated Sm-like protein LSm1 12 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0208 Lele-ChrLele40 1610382 1612567 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0219 37 1697022 1699027 Lele40g0208 40 1610382 1612567 hybridization
Lele38g0221 38 1725533 1734384 Lele40g0208 40 1610382 1612567 hybridization