Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0221 ATGAACAACGCTTCTCCTCTGAACCTTGCATTGGCCTTGGCCTTCGCTTTACTTTGTTGTGTCACTCAATCTCTGGGTTTAGTCCAAAATGACACTCACATTCTCACTCAGTTCCGCCTCCAAGATGATGCTCATGGCTCTCTTCTCTTCAATTGGACAGGCGCCGACGCCTGCTCTACTTTCTGGCGCGGCGTTCAGTGCTCCCCTAATGGCCAGTCTACGTTCTTGAGCTGGGTGCAGCACAAACTCGGAGCCGCCGCTGGAGCGAGGCAAGACAACAGATCAATTCCAAACGCCTATTCATCCACTACATATCACGCCAAACAAGAGACCCGAGAAGAATTCAGGGATTGGCCACATGGTTTGCTAGCAATTGGAACTTTCGGGAAAAAGAATGAAATCAAAGCAAATCCAGACACTCAAAACGCTCATGGCGAAGACGATCCATCCTCGTTATCCGATGAAATAGTAGATTTCACTCCTGAGGAAATTGGGAACCTCCAGAGAGAGCTCAATAAGCTCTTGAGCCAGAAACCCAATGTGGAGAAGGGGATCGCCAAACTCCCTCTCGACCGATTTCTCAACTGCCCATCCTCCTTGCACGTCGATCGAAGGATCAGCAATGCTCTGTGCAGTGATTCATTGGATGATAAAGAAGAAGATATTGAGAAGACACTCAGTGTCATCCTCTGTAAATGCAAGGACATTTGTGCAGATAATACCAAGAATGCAATTGGGAAGAAGCCGATTTCTTCTCTTCTTAAGAAATTGTTGGTTTGTAGAAGCGGGTTTGCGCCGCCACCAAATCCTAAAGATATACTACAAGAATCAAAAATGGAAAAGCTTTTAAGGACAATTCTTCACAAGAAAATATACTCCCAAACTTCTCGATCAACGTCAATGAAGAGGCGCTTAGAGGACAAGAAGATGATGGAGAGGAATGAGGAGGAAGAAACAGAGGAGAGAACTGATGATGGCTGTAAATGGGTTAAGACTGATTCCGAATGCCCTGAGGATGTTTACCTTTCCACTTCACTCGCTAGTTATCTTGACAAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAGCTACTGGGAACACTTTGCTCTTTTGATCAATTTGCTAATGCTGTTCTTGAGGGTGCTTGTGAGAGGGTTATTGTTGGTGAACTGTATTGCGATATCCCTTTGGGTCTCTATGTAATCCGTGGGGAGAATGTTGTTTTGATTGGTGAGCTGGAGTTGGAAAAAGAGGAACTTCCCCCACACATGACACGTGTTTCAACGGCAGAAATTAGAAGGGCACAGAAAGCAGAAAGGGAGGCTACAGATCTGAAGGGAACAATGAGAAGGAGGATGGAGTTCCTGGACTTGGACTAG 1380 0.4558 MNNASPLNLALALAFALLCCVTQSLGLVQNDTHILTQFRLQDDAHGSLLFNWTGADACSTFWRGVQCSPNGQSTFLSWVQHKLGAAAGARQDNRSIPNAYSSTTYHAKQETREEFRDWPHGLLAIGTFGKKNEIKANPDTQNAHGEDDPSSLSDEIVDFTPEEIGNLQRELNKLLSQKPNVEKGIAKLPLDRFLNCPSSLHVDRRISNALCSDSLDDKEEDIEKTLSVILCKCKDICADNTKNAIGKKPISSLLKKLLVCRSGFAPPPNPKDILQESKMEKLLRTILHKKIYSQTSRSTSMKRRLEDKKMMERNEEEETEERTDDGCKWVKTDSECPEDVYLSTSLASYLDKKLLVLLRDGRKLLGTLCSFDQFANAVLEGACERVIVGELYCDIPLGLYVIRGENVVLIGELELEKEELPPHMTRVSTAEIRRAQKAEREATDLKGTMRRRMEFLDLD 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0221 459 MobiDBLite consensus disorder prediction 133 152 - -
Lele38g0221 459 Coils Coil 302 322 - -
Lele38g0221 459 PANTHER OS03G0406300 PROTEIN 75 336 IPR044683 GO:0009630|GO:0040008
Lele38g0221 459 Gene3D - 343 455 - -
Lele38g0221 459 SUPERFAMILY Sm-like ribonucleoproteins 344 414 IPR010920 -
Lele38g0221 459 SMART Sm3 344 412 IPR001163 -
Lele38g0221 459 MobiDBLite consensus disorder prediction 300 316 - -
Lele38g0221 459 MobiDBLite consensus disorder prediction 297 321 - -
Lele38g0221 459 CDD LSm1 343 411 IPR034104 GO:0000956
Lele38g0221 459 FunFam U6 snRNA-associated Sm-like protein LSm1 343 456 - -
Lele38g0221 459 Pfam LSM domain 345 411 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0221 Lele-ChrLele38 1725533 1734384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0221 24 70 Receptor kinase-like Gene Family AT2G36570 61.702 1.99e-13 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0221 38 1725533 1734384 Lele39g1206 39 20759597 20761588 hybridization
Lele38g0221 38 1725533 1734384 Lele40g0208 40 1610382 1612567 hybridization