Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0184 ATGGATGCTCAACCAAAGACTTTATCTGAAGTTGTAAGCATCGTCAATCAATGGATTCCTTGGCCATATCAATCTGAGCCGGCAAATGTGTCCAGGATTTATTGGATGCCCGACAAGATCTGTACAGTATGCTACGGGTGTGATTCCCCACTTACCTTTTTTAATCGTAGGCACCATCGTTGTCACTGCGGCAAAATTTTCTGTGCCAGCTGCACTACAAACTCAGTTCCTGCTCCATCTAGCTACCAGAGGGACAGGGTTCGGGTATGCGATTTTTGTTACAAGCAACGGGAGCAGGACTTAGCTAATTCTAATAACAATAATCAGGTCCCCAATTTGGATCATAGTTCTTCACTATCAGTTTCAAGCTTTACCAGTACTAAATCCAGTGTCACGGCTAATAGTAGTAACAATACTAATTGCTCCCTTCCTGTTTCAATTGATTGTTATCAACAACAGCAACAATCTTCTGATATGAGCCTACATCGATCATCTGTGAAAGTAAAAGGCCTTGATAGGGAGATTTTATCAGCACTTAGAAGAGATCTTGCGGAAAGCCTAGGGGATTCATCGTTAAATCAATGCGAATACTCAATGAAAAGGTATTGTACCTTTGCTCTTGGAGTTACACATAGAGAAACTCCTCAGCCATAG 654 0.4174 MDAQPKTLSEVVSIVNQWIPWPYQSEPANVSRIYWMPDKICTVCYGCDSPLTFFNRRHHRCHCGKIFCASCTTNSVPAPSSYQRDRVRVCDFCYKQREQDLANSNNNNQVPNLDHSSSLSVSSFTSTKSSVTANSSNNTNCSLPVSIDCYQQQQQSSDMSLHRSSVKVKGLDREILSALRRDLAESLGDSSLNQCEYSMKRYCTFALGVTHRETPQP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0184 217 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 26 105 - -
Lele40g0184 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 103 IPR013083 -
Lele40g0184 217 Pfam FYVE zinc finger 34 97 IPR000306 GO:0046872
Lele40g0184 217 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 38 98 IPR017455 -
Lele40g0184 217 SMART fyve_4 30 99 IPR000306 GO:0046872
Lele40g0184 217 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 10 160 - -
Lele40g0184 217 SUPERFAMILY FYVE/PHD zinc finger 34 101 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0184 Lele-ChrLele40 1445292 1445945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0184 2 162 EF-hand Containing Proteins AT3G14270 44.643 5.54e-40 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0184 40 1445292 1445945 Lele40g0184 40 1445292 1445945 ECH
Lele37g0184 37 1484444 1489060 Lele40g0184 40 1445292 1445945 hybridization
Lele38g0191 38 1525012 1527885 Lele40g0184 40 1445292 1445945 hybridization