Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0115 ATGCCGGGTCTAGTTGCGGTGAAAAGCCCAACTCATACGACGCCTTTCGGGGTCTCCGTTACCGAATATTCCAATGGCGGCGAACAAAGACCTTCTTCGCCCATGGTGAAGCCAAGCTTAAAGAAGTCACAGGAAAAGCGGATCACCGACGATTCCTCCCTCGACAACCCGGACATGGGTCCATTTCTTCTGAAGCTAGCCCGAGACGCGATAGCTTCAAGCGAGAACCTAAACAAGGCGTTGAAACCGGCGATCCTGGCGTCAAAATCGTTCAAGCGATGTTCGGGTCCGGGACTGGAGCTTGCCACGTGCTGGCACCGGTCCCTTGAGCTTCCTCATCCTGGAAAAGGGTCGGACCAGGTCATGGCGAAGTTTTCCGGGTACACGCAATTAGCGGATACATATTCGATGATTGGGCCGCTGCAACGGTCTATTAAGGGTTACGGTTCGGGATTGCAGATCCAGATGGAGGCTTTGGGAAAGTCCGACCCGAGAGTGGCAGAGACTTGTAGGTACTTAGCTGAAGCACATGTTCAAGCTATGCAATTTGATGAGGCAGAGAACTTCTGCAAGAAGGCTCTCGAAATTCACAGGGAGCACAGCTCCCCAGCTGTATCAATGATTGCCAATGGACAAGACAACGAAGTTGTTGCAGCTATTGATGTAAGCATTGGTGATATTTACTTGTCACTCTGTTGTTTTGACGAGGCTGTCTTTGCCTATCAGAAAGCTCTTACTGTGTTCAAGACCACCAGAAGCGAGAACCATGGTTCTGTGGCATTAATATACATTCGCCTCGCTGACCTTTACTACAAGACAGGAAAATTAAGAGAGTCAAAATCCTACTGTGAAAATGCCTTGAGAATATACAGCAAACCTGTTCCTGGAACCACCCCTGATGAGATTGCCAGTGGGTTAACTGAAATCTCTGCCATCTATGATGCTCTGAATGAGCCTGAAGAGGCACTGAAGTTGTTGCAGAAGGCGATGAAGTTGTTGGAGGATAGCGCTGGACAGTATAGGACGATCGCAGGAATCGAAGCTCAAATGGCTGTGATGTTCTACACGGTAGGGAGGTTCGTGGAGGCTCGGGACTCTTTTCAAAGTGCCATCACTAAGCTGAGGGCTGGGTTAAAATTAGTTTTTTTTATACCTCTTGGTTTTTGGTGTGAAAGACACAGGGTTGATGATGCTATTGAGATATTGGAGAAGATTCTGAAGATGAGAGAAGAAAAGCTTGGAACGGCAAATCCAGACGTTGATGATGATGAGAAGAAAATATTATATGATCTTTTAATTAGAAAGAAGCAGGAAGAGTTAGGAATAAAAAGGGAAAATCCCTTGAAAATCTTATAG 1356 0.469 MPGLVAVKSPTHTTPFGVSVTEYSNGGEQRPSSPMVKPSLKKSQEKRITDDSSLDNPDMGPFLLKLARDAIASSENLNKALKPAILASKSFKRCSGPGLELATCWHRSLELPHPGKGSDQVMAKFSGYTQLADTYSMIGPLQRSIKGYGSGLQIQMEALGKSDPRVAETCRYLAEAHVQAMQFDEAENFCKKALEIHREHSSPAVSMIANGQDNEVVAAIDVSIGDIYLSLCCFDEAVFAYQKALTVFKTTRSENHGSVALIYIRLADLYYKTGKLRESKSYCENALRIYSKPVPGTTPDEIASGLTEISAIYDALNEPEEALKLLQKAMKLLEDSAGQYRTIAGIEAQMAVMFYTVGRFVEARDSFQSAITKLRAGLKLVFFIPLGFWCERHRVDDAIEILEKILKMREEKLGTANPDVDDDEKKILYDLLIRKKQEELGIKRENPLKIL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0115 451 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 394 436 - -
Lele40g0115 451 ProSiteProfiles TPR repeat profile. 303 336 IPR019734 GO:0005515
Lele40g0115 451 MobiDBLite consensus disorder prediction 1 55 - -
Lele40g0115 451 Pfam Tetratricopeptide repeat 166 200 - -
Lele40g0115 451 Pfam Tetratricopeptide repeat 390 419 - -
Lele40g0115 451 Gene3D Tetratricopeptide repeat domain 125 205 IPR011990 GO:0005515
Lele40g0115 451 Gene3D Tetratricopeptide repeat domain 206 381 IPR011990 GO:0005515
Lele40g0115 451 SUPERFAMILY TPR-like 165 409 IPR011990 GO:0005515
Lele40g0115 451 SMART tpr_5 344 377 IPR019734 GO:0005515
Lele40g0115 451 SMART tpr_5 303 336 IPR019734 GO:0005515
Lele40g0115 451 SMART tpr_5 167 200 IPR019734 GO:0005515
Lele40g0115 451 SMART tpr_5 218 251 IPR019734 GO:0005515
Lele40g0115 451 SMART tpr_5 260 293 IPR019734 GO:0005515
Lele40g0115 451 MobiDBLite consensus disorder prediction 12 39 - -
Lele40g0115 451 Pfam Tetratricopeptide repeat 217 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0115 Lele-ChrLele40 827319 830989 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0115 40 827319 830989 Lele40g0115 40 827319 830989 ECH
Lele37g0109 37 878265 882037 Lele40g0115 40 827319 830989 hybridization
Lele38g0113 38 877560 881295 Lele40g0115 40 827319 830989 hybridization