Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0113 ATGCCGGGTCTAGTTGCGGTTAAAACCCCAACGCATACGACGCTGTTCGGGGTCTCCGTTACCGAATATTCCAATGGCGGCGAACAAAGACCTTCTTCGCCAATGGTGAAGCGAAGCTTAAAGAAGTCACAGGAAAAGCTGATCACCGACGATTCCTCCCTCGACAACCCGGACGTGGGTCCATTTCTTCTGAAGTTAGCCCGAGACGCGATAGCTTCTGGCGAGAACCCGAACAAGGCGTTGGAACCTGCGATCCGGACGTCAAAATCGTTCGAGCGATGTTCGGGTCCGGGCCTGGAGCTTGCCACGTCCTTGCACGTTGTAGCGGCGACCTACAGGAGTTTGGGGCGGTTAGGAGAGGCGATTCACGAGTTGGAGCGGTCCATTGAGCTTTCGGATCCTGGAAAAGGGTCGGACCACGTCATGTCGAAGTTTTCCGGATGCATGCAATTAGGGGATACATATTCGATGATTGGGCAGCTGCGACGGTCTATTAAGTGTTACGGGTCGGGCTTGCAGATCCAGATGGAGGCCTGGGGAAAGTCCGACCCGAGAGTGGCAGAGACTTGTAGGTACTTAGCCGAAGCACATGTTCAAGCTATGCAATTTGATGAGGCAGAGAACTTCTGCATGAAGGCTCACGAAATTCACAGGGAGCATAGCCCCCCAGCGTCCCTTACTGAAGCAACCGATCGGCGCCTCATGGTTCTCATATGTGATGCAAAGGGAGATTATGAATCCGCACTTGAGCATCTTGTTCTGGCCAGTGTATCAATGATTGCCAATGGACAAGACAATGAGGTTGCAGCTATTGATGTAAGCATTGGTGATATTTACTGGTCACTCTGTTGTTTTGACGAGGCTGTCTTTGCCTATCAGAAAGCTCTTACTGGGTTCAAGACCACCGGAAGCGAGAACCATGGTTCTGTGGCATTAATATACATTCGCCTCGCTGACCTTTACTACAAGACAGGAAAATTAAGAGAGTCAAAATCCTACTGTGAAAATGCCTTGAGAATATACAGCAAACCTGTTCCTGGAACCACCCCTGAAGAGATTGCCAGTAGGTTAACTGAAATCTCTGCCATCTATGATGCCCTGAATGAGCCTGAAGAGGCCCTGAAGCTCTTGCAGGAGGCGATGAAGTTATTGGAGGATAACGCTGGACAGTATAGGACGATCGCAGGAATCGAAGCACAAATGGCTGTGATGTTCTACACGGTAGGGAGGTTCGTGGAGGCTCGGGACTCTTTTCAAAGTGTTATCACTAAGCTGAGGGCTAGTGGGGAGAGGAACTCTTCTTTTTTTGGAGTTTTGTTGAACCAAATGGGGCTGGTTTGTGTGCAACTGTACAAAATAGGAGAGGCAGCCAAACTTTTTGAAGAGGCAAGAGAGGTATTGGAGCAGGAGTGTGGAACATATCATTTGGACACTCTAGGAGTGTATAGCAACCTTGCAGCAACTTATGATGCCATGGGGAGGTTTGACGATGCTATTGAGATATTGGAGAAGATTCTGAAGATGAAAGAAGAAAAGCTTGGATCGGCAAATCCAGATGTTGATGATGAAAAGAAAAGATTATATGAGCTTTTGAAAGTAGCAGGAAGAGTTAGGAATAAAAAGGGAAAATCCCTTGAAAATCTTATAGATTCCAACTATCTAAAGATGAAGAAGGAAGGAAGAAAGAGAAGGGTTGCATTTGGTTTGAGAACTTAA 1716 0.4767 MPGLVAVKTPTHTTLFGVSVTEYSNGGEQRPSSPMVKRSLKKSQEKLITDDSSLDNPDVGPFLLKLARDAIASGENPNKALEPAIRTSKSFERCSGPGLELATSLHVVAATYRSLGRLGEAIHELERSIELSDPGKGSDHVMSKFSGCMQLGDTYSMIGQLRRSIKCYGSGLQIQMEAWGKSDPRVAETCRYLAEAHVQAMQFDEAENFCMKAHEIHREHSPPASLTEATDRRLMVLICDAKGDYESALEHLVLASVSMIANGQDNEVAAIDVSIGDIYWSLCCFDEAVFAYQKALTGFKTTGSENHGSVALIYIRLADLYYKTGKLRESKSYCENALRIYSKPVPGTTPEEIASRLTEISAIYDALNEPEEALKLLQEAMKLLEDNAGQYRTIAGIEAQMAVMFYTVGRFVEARDSFQSVITKLRASGERNSSFFGVLLNQMGLVCVQLYKIGEAAKLFEEAREVLEQECGTYHLDTLGVYSNLAATYDAMGRFDDAIEILEKILKMKEEKLGSANPDVDDEKKRLYELLKVAGRVRNKKGKSLENLIDSNYLKMKKEGRKRRVAFGLRT 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0113 571 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515
Lele38g0113 571 Pfam Tetratricopeptide repeat 439 511 - -
Lele38g0113 571 Pfam Tetratricopeptide repeat 310 385 - -
Lele38g0113 571 Pfam Tetratricopeptide repeat 101 131 - -
Lele38g0113 571 SMART tpr_5 145 178 IPR019734 GO:0005515
Lele38g0113 571 SMART tpr_5 311 344 IPR019734 GO:0005515
Lele38g0113 571 SMART tpr_5 354 387 IPR019734 GO:0005515
Lele38g0113 571 SMART tpr_5 269 302 IPR019734 GO:0005515
Lele38g0113 571 SMART tpr_5 102 135 IPR019734 GO:0005515
Lele38g0113 571 SMART tpr_5 395 428 IPR019734 GO:0005515
Lele38g0113 571 SMART tpr_5 187 220 IPR019734 GO:0005515
Lele38g0113 571 SMART tpr_5 479 512 IPR019734 GO:0005515
Lele38g0113 571 SMART tpr_5 437 470 IPR019734 GO:0005515
Lele38g0113 571 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 32 552 - -
Lele38g0113 571 SUPERFAMILY HCP-like 239 341 - -
Lele38g0113 571 Gene3D Tetratricopeptide repeat domain 97 255 IPR011990 GO:0005515
Lele38g0113 571 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Lele38g0113 571 Pfam MalT-like TPR region 149 252 IPR041617 -
Lele38g0113 571 SUPERFAMILY TPR-like 149 509 IPR011990 GO:0005515
Lele38g0113 571 Gene3D Tetratricopeptide repeat domain 428 541 IPR011990 GO:0005515
Lele38g0113 571 Coils Coil 367 387 - -
Lele38g0113 571 Gene3D Tetratricopeptide repeat domain 256 427 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0113 Lele-ChrLele38 877560 881295 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0113 38 877560 881295 Lele38g0113 38 877560 881295 ECH
Lele38g0113 38 877560 881295 Lele39g1317 39 21608565 21612347 hybridization
Lele38g0113 38 877560 881295 Lele40g0115 40 827319 830989 hybridization