Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0109 ATGCCGGGTTTAGTTGCGGTGAAAACCCCACCTCCTACGACGCCGTTCGGGGTCTCCGTTACCGAATATTCCAATGGCGGCGAACAAAGACCTTCTTCGCCCATGGGGAAGCGAAGCTTAAAGAAGTCACGGGAAAAGCTGATCACCGACGATTCCTCCCTCGACAGCCCAGACGTGGGTCCATTTCTTCTGAAGCTAGCCCGAGACGCGATAGCTTCGGGCGAGAACCCGAACAAGGCGTTGGACCTTGCGATCCGGGCGTCAAGATCGTTCGAACGATGTTCGGGCCCTGGCCTGGAGCTTGCCACGTGCTTGCACGTTGTGGCGGCGATCTACAGTAGCTTGGGGCGGTTCGGAGAGGCGATTCACGAGTTGGAGCGGTCCATTGAGCTTGCGGATCCTGGAAAAGGGTCGGATCACGCCATGGCGAAGTTTTCCGGGTACATGCAATTAGGGGATACATATTCGATGATTGGGCAGCTGCAACGGTCTATTAAGTGTTACCGTTCGGGATTGCAGATCCAAATGGAGGCTTTGGGGAAGTCCGACCCGAGAGTCTCAGAGACTTTCAGGTACTTAGCTGAAGCCCATGTTCAAGCTATGCAATTTGATGAGGCAGAGAACTTCTGCAAGAAGGCTCTTGAAATTCACAGGGAGCATAGCTCCCCAGCTTCCCTTACTGAAGCAACCGATCGGCGCCTCATGGCTCTCATATGTGATGCAAAGGGAGATTATGAATCAGCACTTGAGCACCTTGTCCTGGCCAGCGTATCAATGATTGCCAATGGACAAGACAATGAGGTTGCAGCTATTGATGTAAGCATCGGTGATATTTACTTGTCACTCTGTCGTTTTGACGAGGCTGTCTTCGCCTATCAGAAAGCTCTTACTGTGTTCAAAACCACCAGAAGCGAGAACCATGGCTCTGTGGCATTAGTATACATTCGCCTTGCTGACCTTTACTACAAGACAGGAAAATTAAGAGAGTCAAAATCCTACTGTGAAAATGCCTTGAGAGCATACAGCAAACCTGTTCCTGGAACCACACCTGAAGAGATTGCCAGTGGTTTGACTCAAATCTCTGCCATCTATGATGCTCTGAATGAGCCTGAAGAGGCACTGAAGCTCTTGCAGAAGGCAATGAAGTTACTGGAGGATAACGCTGGACAGTATAGGACGATCGCAGGAATTGAAGCACAAATGGCTGTGATGTTCTACACGGTAGGGAGGTTCGTGGACGCTCGGGACTCTTTTCAAAGTGCCATCACTAAGCTGAGGGCTAGTGGGGAGAGGAACTCTGCCTTTTTTGGAGTTTTGTTGAACCAAATGGGGCTTGCTTGTGTGCAACTGTACAAAATAGGAGAGGCAGCCAAACTTTTTGAAGAGGCAAGAGAGATATTGGAGCAGGAGTGTGGGACATATCATTTGGACACTCTAGGAGTTTATAGCAACCTTGCAGCAACTTATGATGCCATGGGGAGGGTTGATGATGCCATTGAGATATTGGAGAAGATTCTGAAGATGAGAGAAGAAAAGTTGGGAACGGCAAATCCAGATGTTGATGATGAGAAGAAAAGACTATATGAGCTTTTGAAAGAAGCAGGAAGAGTTCGGAATAAAAAGGGAAAATCCCTTGAAAATCTTATAGATTCCAACTTTCTAAAGATGAAGGAAGGAAGAAAGAGAAGGGCCGCATTTGGTTTGAGAACTTAA 1713 0.4845 MPGLVAVKTPPPTTPFGVSVTEYSNGGEQRPSSPMGKRSLKKSREKLITDDSSLDSPDVGPFLLKLARDAIASGENPNKALDLAIRASRSFERCSGPGLELATCLHVVAAIYSSLGRFGEAIHELERSIELADPGKGSDHAMAKFSGYMQLGDTYSMIGQLQRSIKCYRSGLQIQMEALGKSDPRVSETFRYLAEAHVQAMQFDEAENFCKKALEIHREHSSPASLTEATDRRLMALICDAKGDYESALEHLVLASVSMIANGQDNEVAAIDVSIGDIYLSLCRFDEAVFAYQKALTVFKTTRSENHGSVALVYIRLADLYYKTGKLRESKSYCENALRAYSKPVPGTTPEEIASGLTQISAIYDALNEPEEALKLLQKAMKLLEDNAGQYRTIAGIEAQMAVMFYTVGRFVDARDSFQSAITKLRASGERNSAFFGVLLNQMGLACVQLYKIGEAAKLFEEAREILEQECGTYHLDTLGVYSNLAATYDAMGRVDDAIEILEKILKMREEKLGTANPDVDDEKKRLYELLKEAGRVRNKKGKSLENLIDSNFLKMKEGRKRRAAFGLRT 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0109 570 ProSiteProfiles TPR repeat profile. 187 220 IPR019734 GO:0005515
Lele37g0109 570 Gene3D Tetratricopeptide repeat domain 41 254 IPR011990 GO:0005515
Lele37g0109 570 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515
Lele37g0109 570 SUPERFAMILY TPR-like 312 428 IPR011990 GO:0005515
Lele37g0109 570 Gene3D Tetratricopeptide repeat domain 434 541 IPR011990 GO:0005515
Lele37g0109 570 SUPERFAMILY TPR-like 57 174 IPR011990 GO:0005515
Lele37g0109 570 Pfam Tetratricopeptide repeat 268 342 - -
Lele37g0109 570 Pfam Tetratricopeptide repeat 439 511 - -
Lele37g0109 570 SUPERFAMILY TPR-like 148 509 IPR011990 GO:0005515
Lele37g0109 570 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 35 552 - -
Lele37g0109 570 SMART tpr_5 311 344 IPR019734 GO:0005515
Lele37g0109 570 SMART tpr_5 145 178 IPR019734 GO:0005515
Lele37g0109 570 SMART tpr_5 269 302 IPR019734 GO:0005515
Lele37g0109 570 SMART tpr_5 187 220 IPR019734 GO:0005515
Lele37g0109 570 SMART tpr_5 102 135 IPR019734 GO:0005515
Lele37g0109 570 SMART tpr_5 354 387 IPR019734 GO:0005515
Lele37g0109 570 SMART tpr_5 479 512 IPR019734 GO:0005515
Lele37g0109 570 SMART tpr_5 437 470 IPR019734 GO:0005515
Lele37g0109 570 SMART tpr_5 395 428 IPR019734 GO:0005515
Lele37g0109 570 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Lele37g0109 570 MobiDBLite consensus disorder prediction 38 52 - -
Lele37g0109 570 Coils Coil 367 387 - -
Lele37g0109 570 MobiDBLite consensus disorder prediction 1 53 - -
Lele37g0109 570 MobiDBLite consensus disorder prediction 14 32 - -
Lele37g0109 570 Gene3D Tetratricopeptide repeat domain 255 433 IPR011990 GO:0005515
Lele37g0109 570 ProSiteProfiles TPR repeat profile. 269 302 IPR019734 GO:0005515
Lele37g0109 570 Pfam MalT-like TPR region 109 252 IPR041617 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0109 Lele-ChrLele37 878265 882037 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0109 37 878265 882037 Lele37g0109 37 878265 882037 ECH
Lele37g0109 37 878265 882037 Lele39g1317 39 21608565 21612347 hybridization
Lele37g0109 37 878265 882037 Lele40g0115 40 827319 830989 hybridization