Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1317 ATGCCGGGTTTAGTTGCGGTGAAAACCCCACCTCATACGACGCCGTTAGGGGTCTCCGTTACCGAATATTCCAATGGCGGCGAACAAAAACCTTCTTCGCCCATGGGGAAGCGAAGCTTAAAGAAGTCACGGGAAAAGCTGATCACCCACGATTCCTCCCTCGACAGCCCAGATGTGGGTCCATTTCTTCTGAAACTAGCCCGAGACTCGATAGCTACGGGCGAGAACCCGAACAAGGCGTTGGACCTTGCGATCCGGGCGTCAAAATCGTTCGAGCTATGTTCGGGCCCGGGCCTGGAGCTTGCCACGTGCTTGCACGTTGTGGCGGCGATCTACAGTAGCTTGGGGCGGTTCGGAGAGGCGATTCACGAGTTGGAGCGGTCCATTGAGCTTCCGGATGCTGAAAAAGGGTCGGATCACGCCATGGCGAAGTTTTCCGGGTACATGCAATTAGGGGATACATATTCGATGATTGGGCAGCTGCAACGGTCTATTAAGTGTTACAGTTCGGGATTGCAGATCCAAATGGAGGCTTTGGGGAAGTCCGACCCGAGAATCGCAGAGACTTTCAGGTACTTAGCTGAAACCCATGTTCAAGCTATGCAATTTGATGAGGCAGAGAAATTCTGCAAGAAGGCTCTTGAAATTCACAGGGAGCATAGCTCCCCGGCTTCCCTTACCGAAGCAACCGATCGGCGCCTCATGGCTCTCATATGTGATGCAAAGGGAGATTATGAATCAGCACTTGAGCACCTTGTCCTGGCCAGCGTATCAATGATTGCCAATGGACAAGACAATGAGGTTGCAGCTATTGATGTAAGCATCGGCGATATTTACTTGTCACTCTGTCGTTTTGACGAGGCTGTCTTCGCCTATCAGAAAGCTCTTACTGTGTTCAAAACCACCAGAAGCGAGAACCATGGTTCTGTGGCATTAGTATACATTCGCCTTTCTGACCTTTACTACAAGACAGGAAAATTAAGAGAGTCAAAATCCTACTGTGAAAATGCCTTGAGAGTATACAGCAAACCTGTTCCTGGAACCACCCCTGAAGAGATTGCCAGTGGTTTGACTCAAATCTCTGCCATCTATGATGCTCTGAATGAGCCTGAAGAGGCGCTGAAGCTCTTGCAGAAGGCAATGAAGTTACTGGAGGATAACGCTGGACAGTACAGGACGATCGCAGGAATTGAAGCACAAATGGCTGTGATGTTCTACACGGTAGGGAGGTTCGTGGAGGCTCGGGACTCTTTTCAAAGTGCCATCACTAAGCTGAGGGCTAGTGGGGAGAGGAACTCTGCCTTTTTTGGAGTTTTGTTGAACCAAATGGGGCTGGCTTGTGTGCAACTGTACAAAATAGGAGAGGCAGCCAAACTTTTTGAAGAGGCAAGAGAGATATTGGAGCAGGAGTGTGGGACATATCATTTGGACACTCTAGGAGTTTATAGCAACCTTGCAGCAACTTACGATGCCATGGGGAGGGTTGATGATGCCATTGAGATATTGGAGAAGATTCTGAAGATGAGAGAAGAAAAGCTGGGAACGGCAAATCCAGATGTTGATGATGAGAAGAAAAGACTATATGAACTTTTGAAAGAAGCAGGAAGAGTTCGGAATAAAAAGGGAAAATCCCTTGAAAATCTTATAGATTCCAACTTTCTAAAGATGAAGAAGGAAGGAAGAAAGAGAAGGGCCGCATTTGGTTTGAGAACTTAA 1716 0.4814 MPGLVAVKTPPHTTPLGVSVTEYSNGGEQKPSSPMGKRSLKKSREKLITHDSSLDSPDVGPFLLKLARDSIATGENPNKALDLAIRASKSFELCSGPGLELATCLHVVAAIYSSLGRFGEAIHELERSIELPDAEKGSDHAMAKFSGYMQLGDTYSMIGQLQRSIKCYSSGLQIQMEALGKSDPRIAETFRYLAETHVQAMQFDEAEKFCKKALEIHREHSSPASLTEATDRRLMALICDAKGDYESALEHLVLASVSMIANGQDNEVAAIDVSIGDIYLSLCRFDEAVFAYQKALTVFKTTRSENHGSVALVYIRLSDLYYKTGKLRESKSYCENALRVYSKPVPGTTPEEIASGLTQISAIYDALNEPEEALKLLQKAMKLLEDNAGQYRTIAGIEAQMAVMFYTVGRFVEARDSFQSAITKLRASGERNSAFFGVLLNQMGLACVQLYKIGEAAKLFEEAREILEQECGTYHLDTLGVYSNLAATYDAMGRVDDAIEILEKILKMREEKLGTANPDVDDEKKRLYELLKEAGRVRNKKGKSLENLIDSNFLKMKKEGRKRRAAFGLRT 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1317 571 MobiDBLite consensus disorder prediction 1 45 - -
Lele39g1317 571 Pfam MalT-like TPR region 109 252 IPR041617 -
Lele39g1317 571 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 29 552 - -
Lele39g1317 571 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515
Lele39g1317 571 SUPERFAMILY TPR-like 76 174 IPR011990 GO:0005515
Lele39g1317 571 SUPERFAMILY TPR-like 148 509 IPR011990 GO:0005515
Lele39g1317 571 Pfam Tetratricopeptide repeat 439 511 - -
Lele39g1317 571 Pfam Tetratricopeptide repeat 268 342 - -
Lele39g1317 571 SUPERFAMILY TPR-like 234 341 IPR011990 GO:0005515
Lele39g1317 571 Gene3D Tetratricopeptide repeat domain 257 435 IPR011990 GO:0005515
Lele39g1317 571 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Lele39g1317 571 Gene3D Tetratricopeptide repeat domain 438 559 IPR011990 GO:0005515
Lele39g1317 571 ProSiteProfiles TPR repeat profile. 187 220 IPR019734 GO:0005515
Lele39g1317 571 SMART tpr_5 269 302 IPR019734 GO:0005515
Lele39g1317 571 SMART tpr_5 187 220 IPR019734 GO:0005515
Lele39g1317 571 SMART tpr_5 311 344 IPR019734 GO:0005515
Lele39g1317 571 SMART tpr_5 354 387 IPR019734 GO:0005515
Lele39g1317 571 SMART tpr_5 102 135 IPR019734 GO:0005515
Lele39g1317 571 SMART tpr_5 395 428 IPR019734 GO:0005515
Lele39g1317 571 SMART tpr_5 479 512 IPR019734 GO:0005515
Lele39g1317 571 SMART tpr_5 145 178 IPR019734 GO:0005515
Lele39g1317 571 SMART tpr_5 437 470 IPR019734 GO:0005515
Lele39g1317 571 Coils Coil 367 387 - -
Lele39g1317 571 MobiDBLite consensus disorder prediction 14 32 - -
Lele39g1317 571 ProSiteProfiles TPR repeat profile. 269 302 IPR019734 GO:0005515
Lele39g1317 571 Gene3D Tetratricopeptide repeat domain 67 256 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1317 Lele-ChrLele39 21608565 21612347 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1317 39 21608565 21612347 Lele39g1317 39 21608565 21612347 ECH
Lele37g0109 37 878265 882037 Lele39g1317 39 21608565 21612347 hybridization
Lele38g0113 38 877560 881295 Lele39g1317 39 21608565 21612347 hybridization