Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1054 ATGGTCACTGAACAAAAACCACCAGAGCAGGAGAAGGTGGTGGTGCTGCTGGAGAATGGCACAATGAACGGCTCACTCGCCGGACCTTCCGCCGGGATCCGATGGAAACCTGATGCGATGCACTTGATTCTGAGGCTGTTATGCATGGTTAGTTCAGTGATCGCGCTTTCGTTCATGGTAACGGCCAAGCAAGCTGGCTCTATCTCCATTTATGGCTTTCACTTTCCGGTTTACTCCAAGTGGTCATACGCTGAATCGTTCGAATATCTTGTTGGTGTTTCTGCTGCGGTTTCTTCTCACTCCTTGCTGCAGCTACTCATTGGAACATCAAGGTTTCTAAAGAAATCTCCTGTGATTCCCTCAAGAAATTTCGCATGGCTTATATTTGCAGGGGATCAGGCATTTGCTTATGCACTGATAAGTGCAGGGTCTGCTGCATCAGGAGTGACCAATCTGAAGCACAATGGAATTAGACATCCAGCTCTGCCAAGTTTCTGTAAGCCCCTCCATAAGTTCTGTGACCATGTAGGCATCTCAATAGCCTTCACTTTCATAGGCTGTTTGATGCTCGCTGCTTCTGCTATCCTGGATGTAATGTGGCTCTCTAACCACTAG 615 0.478 MVTEQKPPEQEKVVVLLENGTMNGSLAGPSAGIRWKPDAMHLILRLLCMVSSVIALSFMVTAKQAGSISIYGFHFPVYSKWSYAESFEYLVGVSAAVSSHSLLQLLIGTSRFLKKSPVIPSRNFAWLIFAGDQAFAYALISAGSAASGVTNLKHNGIRHPALPSFCKPLHKFCDHVGISIAFTFIGCLMLAASAILDVMWLSNH 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1054 204 Pfam Casparian strip membrane protein domain 39 188 IPR006702 -
Lele39g1054 204 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 42 197 IPR006459 -
Lele39g1054 204 PANTHER CASP-LIKE PROTEIN 4A4 35 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1054 Lele-ChrLele39 19164356 19167449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1054 36 204 Miscellaneous Gene Families AT3G16300 47.929 9.56e-49 156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1054 39 19164356 19167449 Lele39g1054 39 19164356 19167449 ECH
Lele37g0373 37 3128561 3131356 Lele39g1054 39 19164356 19167449 hybridization
Lele38g0350 38 2840038 2843435 Lele39g1054 39 19164356 19167449 hybridization