Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1044 ATGGACAGAGAATCGCCAGCCTCTTCTTCTTCTTCTTCTTCTTCATCATCATCAACAACAAGGGCAATGACCAGCAACAATCTCCCACCACCCGAAGATGCTTGGCTTGATACTTGCCACAAGTTGCTGCCTCGTTGGGAATCTCATTCCCTTTCTCATCAGTCAATGATTCCTATTTCTATATCAAGAGTTAACCAAGTTGATGCTGCTAGACTGGATGTTGAAATGTCAGCCATGTTGAAGGAACAGTTGGTTAAAGTGTTCTCTTTAATGAAGCCAGGAATGTTATTTCAGTACGAAGCTGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGATTCTCAATTTGGGTTGATAAGCCAACTCCAGGCATTGCTCTCATGAACCTGAGGTATAGAGATGAGCGTGCAATTGAACCAAGAGAAAAAGTCAGAACTGGTCTTGAGGGTCCTGGACTCACTGTTGCTCAGAAGATTTGGTATTGTATTGCAACTGTTGGTGGTCAGTATATCTGGGCCCGCATTCAATCCTTTTCTGCTTTTCGTCGTTGGGGTGATTCTGATCAGAGGTCACTGGCACGCCGGTTATGGATCCTTATACAACGTATAGAAGGAATTTATAGAGCTGCTTCATTTGGCAACCTGTTGATATTTCTTTATACTGGAAGATATAGAAATCTCATTGAAAGAGCTTTACGAGCTAGGCTTGTCTATGGGAGCCCGAATATGACTCGTGCTGTTAGCTTTGAGTATATGAATCGGCAGTTAGTTTGGAATGAATTCTCGGAAATGTTGCTGTTGCTTCTTCCTCTTCTTAATTCATCGTCTATGAGAAATCTCCTTCGACCATTTTCGAAGGATAAATCCTCAAGTTCAGATCAGGATGACAACACGTGCCCCATTTGTCGATCTACTCCAACCGTTCCTTTTGTTGCTCTGCCTTGTCAGCACAGATATTGTTACTATTGTCTTCGAACACGCTGTGCCGCTGCTCCATCATTTAGATGTTCCAGGTGTAGTGAGCCAGTCGCCGCTATGCAGCGGCACAGTGGTGGTGTCACCTATGGATGA 1071 0.437 MDRESPASSSSSSSSSSSTTRAMTSNNLPPPEDAWLDTCHKLLPRWESHSLSHQSMIPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAIEPREKVRTGLEGPGLTVAQKIWYCIATVGGQYIWARIQSFSAFRRWGDSDQRSLARRLWILIQRIEGIYRAASFGNLLIFLYTGRYRNLIERALRARLVYGSPNMTRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSMRNLLRPFSKDKSSSSDQDDNTCPICRSTPTVPFVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVAAMQRHSGGVTYG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1044 356 ProSiteProfiles Zinc finger RING-type profile. 299 340 IPR001841 -
Lele39g1044 356 PANTHER PEROXISOME BIOGENESIS FACTOR 2 24 353 - -
Lele39g1044 356 Pfam Pex2 / Pex12 amino terminal region 73 277 IPR006845 -
Lele39g1044 356 Pfam Zinc finger, C3HC4 type (RING finger) 299 339 IPR018957 GO:0046872
Lele39g1044 356 CDD RING-HC_PEX2 298 340 - -
Lele39g1044 356 ProSitePatterns Zinc finger RING-type signature. 315 324 IPR017907 -
Lele39g1044 356 SMART ring_2 299 339 IPR001841 -
Lele39g1044 356 MobiDBLite consensus disorder prediction 1 32 - -
Lele39g1044 356 MobiDBLite consensus disorder prediction 1 27 - -
Lele39g1044 356 SUPERFAMILY RING/U-box 292 344 - -
Lele39g1044 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1044 Lele-ChrLele39 19081903 19084577 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1044 39 19081903 19084577 Lele39g1044 39 19081903 19084577 ECH
Lele37g0384 37 3216003 3218629 Lele39g1044 39 19081903 19084577 hybridization
Lele38g0362 38 2950124 2952784 Lele39g1044 39 19081903 19084577 hybridization