Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0893 ATGGCTCTCCTTCTGCAACTCAGAACGAGAACCAGGAAGAATACCTTCACATATCCATCTCTCTCCCATTTCTCCTCTACCTCCCATTCCAACGACGATGAACCTGAATCCACCGCCACCTCCTCCGACGATAATCCTTCTACAAACTCTAATTCTCCTTTCTCTTCCTATTTCAGCGATGTCAAGAAGGTTCTCAAACAGGACCAATCCCCTTCATCCTTTTTCACCCCAAGAAATCCCTCAAATTCTTCCTTCTCTGCTTCCGGTTCTGCTGCTCCGACACCATACAAAGGTGCTACTCTTGATGAAATCCGTAAGAACCTAAGCCAATTTCGCCATCGTGTCTCGGACGCAGATACAACGCGTTCGTCTTCACCTTCATTGAATCAAGTCTCTTTACAGGAGATCTATAGGAGAAATATGGCTGGAAAATCGGGCCAATCTACGCCAATTGCTGATTCAAGGCCTGGGAAAATTGGAGGAAGACTTTCCTTCGATGCAATTCGTGAAAGCGTGCGGAATAGAAGGCAGAATGTTGATCCCTCCGGGAGTGACCGCAGAGACGGGGGACTATCGTCGCTTTCGGCATTTGCCCAGAGTTTAAGAAAAGAGCCTTCGGGCTCCACTGGTTCTCGGACATGGTTGGGGAAATTGAGGGAAATGGATGAGAAGGAGAAGGAGAAATCACACATTATGAGCTTTGGCATTAAGGATTTGCAAGAGGCCTTGATTAAGGCGCAGGAGCCTGATAAGCAGGAGAGAAAAAGTACAACACTTGATATCTTGGGTGAGCTGGGCCGGACTCCAAGCTTCATGCTGCAGCCTCCTAAGGAGCATCTTGTTGAAAAGTATTTCCATCCAGACAATATGTCTTCATCAGAAAAGATGAAAATCGAGCTTGAGAGAATTAGGGATGAGTTTAAAATGTCTGAGTCAGATTGTGGATCATTTCGTGTTCAAGTTGCACAACTCACAACTAAGATTAAGCATCTATCATCAGTTTTGCACAAGAAGGATAAGCACTCTCGTAAAGGCTTGATAGCAATGGTTCAGAAGAGGAAAAGGTTACTGAAATACCTCAGAAGAACTGACTGGGATTCCTACTGTTTTGTGATTTCAAAGCTAGGTCTTCGAGATAATCCAGATACTAAGTACTGA 1158 0.4499 MALLLQLRTRTRKNTFTYPSLSHFSSTSHSNDDEPESTATSSDDNPSTNSNSPFSSYFSDVKKVLKQDQSPSSFFTPRNPSNSSFSASGSAAPTPYKGATLDEIRKNLSQFRHRVSDADTTRSSSPSLNQVSLQEIYRRNMAGKSGQSTPIADSRPGKIGGRLSFDAIRESVRNRRQNVDPSGSDRRDGGLSSLSAFAQSLRKEPSGSTGSRTWLGKLREMDEKEKEKSHIMSFGIKDLQEALIKAQEPDKQERKSTTLDILGELGRTPSFMLQPPKEHLVEKYFHPDNMSSSEKMKIELERIRDEFKMSESDCGSFRVQVAQLTTKIKHLSSVLHKKDKHSRKGLIAMVQKRKRLLKYLRRTDWDSYCFVISKLGLRDNPDTKY 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0893 385 Pfam Ribosomal protein S15 302 378 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele39g0893 385 TIGRFAM S15_bact: ribosomal protein uS15 299 378 IPR005290 GO:0003735|GO:0005840|GO:0006412
Lele39g0893 385 Gene3D - 294 343 - -
Lele39g0893 385 MobiDBLite consensus disorder prediction 140 191 - -
Lele39g0893 385 MobiDBLite consensus disorder prediction 69 93 - -
Lele39g0893 385 SUPERFAMILY S15/NS1 RNA-binding domain 299 379 IPR009068 -
Lele39g0893 385 MobiDBLite consensus disorder prediction 69 97 - -
Lele39g0893 385 MobiDBLite consensus disorder prediction 16 56 - -
Lele39g0893 385 SMART Ribosomal_S15_2 300 378 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele39g0893 385 CDD Ribosomal_S15p_S13e 299 376 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele39g0893 385 Hamap 30S ribosomal protein S15 [rpsO]. 290 379 IPR005290 GO:0003735|GO:0005840|GO:0006412
Lele39g0893 385 Gene3D - 345 380 - -
Lele39g0893 385 PANTHER S15/NS1, RNA-BINDING PROTEIN 1 200 - -
Lele39g0893 385 MobiDBLite consensus disorder prediction 168 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0893 Lele-ChrLele39 17855929 17858523 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0533 37 4419306 4421220 Lele39g0893 39 17855929 17858523 hybridization
Lele38g0509 38 4193611 4196442 Lele39g0893 39 17855929 17858523 hybridization