Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0509 ATGGCTCTCCTTCTGCAACTCAGAACGAGAACAAGAAAGAATACCTTCACAAATCCTTCTCTCTCCCATTTCTTTTCGACCTCCAATTCCAATGACGATGAACCTGAATCCACCGCCGCCACCTCCGACGATACTCCTTCTACAAATTCTGATTCTCCTTTCTCCTCCTATTTCAGCGATGTCAAGAAGGTCCTCAAACAGGGCCAATCCACTTCCTCCTTCTCCACCCCAAGATATCCCTCAAATTCTTCTGCTGCTCCAACGCCACACAAAGCTGCTAGTCTTGATGAAATCCTAAAGAACCTAGGCCAATTCCGGCGTCGTGTCTCGGACTCAGATTCAGCACCTCCGTCTTCGCCTTCATCGAATCAAATCTCATTACAGGAGATCTATAGGAGAAATATGGCTGCAAAACAAGGTGAATCGACGCCACCTGCTGATTTAAGGCCTGGGACAATTGGGGGAAGACTTTCTTTTGATGCGATTCGTGAAAGCGTGCGGAATAGAAGGCAGAATGTTGACCCCTTTGGGAGTGACAGGAAAGATGGGGGACTATCTTCGTTATCGGCATTTTCCCGGAGTTCAAGAAAGGAGCCTTCAGACTCCACTGGTTCTCGGACATTGTCGAGGATAATTGGGGGGACGGTATTGCCGGAGTCGGTTTTTGGCAGGGAGTTGAGGGAGAAGGAGAGGGGAGAGAAGTCAGATGAAATGAAAATGGAAATGGATGAGAAGGAGAATGAGAAATCAACCACTATTGGGCTTACCGTCAAGGATTTGAAAGATGCCTTTATTAAGGTGAAGGGGTCTGAGAACCAGGAAACCACAAGTACACTGAGACTTGATATCTTGGGTGAGCTGGGAAGGGCTCCAAGCTTCATGCTGCAGCCTCCTAAGGAGCATCTTGTTGAAAGGTTGTTCTCTGTTTATGTGGTTCACATGTCTATCATGTGGATGCTTTATTATTTCCATCCAGACAATATGTCTTCAGCAGAAAAGTTGAAAATCGAGCTTGCAAGAATTCGGGATGAGTTTAAAATGTCCGAGTCAGATTGTGGATCATTTCGTGTTCAAGTTGCACAACTCACAACTAAGATTAAGCTTCTATCATCAGTTCTACACAAGAAGGATAAGCATTCTCGTAAAGGGTTGATAGCAATGGTTCAGAAGAGGAAAAGGTTACTGAAATACCTCAGGAGAACTGACTGGGATTCCTACTGTTTTGTGCTTTCGAAGCTAGGTCTACGAGATAATCCAGATACTAAGTACTGA 1272 0.4528 MALLLQLRTRTRKNTFTNPSLSHFFSTSNSNDDEPESTAATSDDTPSTNSDSPFSSYFSDVKKVLKQGQSTSSFSTPRYPSNSSAAPTPHKAASLDEILKNLGQFRRRVSDSDSAPPSSPSSNQISLQEIYRRNMAAKQGESTPPADLRPGTIGGRLSFDAIRESVRNRRQNVDPFGSDRKDGGLSSLSAFSRSSRKEPSDSTGSRTLSRIIGGTVLPESVFGRELREKERGEKSDEMKMEMDEKENEKSTTIGLTVKDLKDAFIKVKGSENQETTSTLRLDILGELGRAPSFMLQPPKEHLVERLFSVYVVHMSIMWMLYYFHPDNMSSAEKLKIELARIRDEFKMSESDCGSFRVQVAQLTTKIKLLSSVLHKKDKHSRKGLIAMVQKRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDTKY 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0509 423 SMART Ribosomal_S15_2 338 416 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele38g0509 423 MobiDBLite consensus disorder prediction 107 127 - -
Lele38g0509 423 SUPERFAMILY S15/NS1 RNA-binding domain 338 417 IPR009068 -
Lele38g0509 423 MobiDBLite consensus disorder prediction 16 89 - -
Lele38g0509 423 MobiDBLite consensus disorder prediction 166 210 - -
Lele38g0509 423 MobiDBLite consensus disorder prediction 111 127 - -
Lele38g0509 423 CDD Ribosomal_S15p_S13e 340 414 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele38g0509 423 MobiDBLite consensus disorder prediction 16 91 - -
Lele38g0509 423 MobiDBLite consensus disorder prediction 226 251 - -
Lele38g0509 423 Hamap 30S ribosomal protein S15 [rpsO]. 328 417 IPR005290 GO:0003735|GO:0005840|GO:0006412
Lele38g0509 423 Gene3D - 383 418 - -
Lele38g0509 423 MobiDBLite consensus disorder prediction 185 210 - -
Lele38g0509 423 TIGRFAM S15_bact: ribosomal protein uS15 339 416 IPR005290 GO:0003735|GO:0005840|GO:0006412
Lele38g0509 423 Pfam Ribosomal protein S15 340 416 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele38g0509 423 Coils Coil 331 351 - -
Lele38g0509 423 Gene3D - 334 381 - -
Lele38g0509 423 PANTHER S15/NS1, RNA-BINDING PROTEIN 241 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0509 Lele-ChrLele38 4193611 4196442 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0509 38 4193611 4196442 Lele39g0893 39 17855929 17858523 hybridization
Lele38g0509 38 4193611 4196442 Lele40g0479 40 3996061 3999339 hybridization