Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0509 ATGCCAACAATAATGGCGTCTTACTCGTTCTTGTGTGTTGTCTCTCTCCTGCTTTCTCTCACTCCAAACTTATCAGTCGCCAGTCAGATTCCTAAGCTTCCACCTCCGTCGCATGGAACAATCATCACCATTCTTAGTATTGATGGCGGTGGTCTTCGAGGTCTCATCCCCGCCGTGGTTCTCCGACGCCTGGAAGCTCATCTTCAGGAAATAAGCAACAGTGAGCAGTTAAGGATAGCAGACTTTTTTGATGTAATAGCTGGAACCAGCACTGGTGGACTTATTAGTGAAATGCTGACAGCTCCAGACTCAAACAACCGACCTTTGTTCCATGCTTCTGAAATAGTTCAGTTCTACAAAGATGAAGCTGCCAAGATTTTCCCGCCACATACACCGGTAAATCTGTTGAAGCCCAAGTACAGTAATGCTTACTTGCGTCATATTACACAAAAGATATTGAACCAAACAAGACTGAAAGATACTTTGACGAATGTTGTTATCACAGCTTTCGATATCAAGCAACTTTCGCCTACGCTCTTCTCTAATTATAAGTTAGAAGAAGTGCCGCAATTGAATGCGTTGCTCTCAGATATAGCCATGGCGACTTCAGCTGCACCAGCGTATCTCCCACCATACCTCTTTGAGAACGCTGGCCAACAGTTCCATATGATTGACGGTGGTGTTATCGCAACTAATCCGGGTATGGTTGCTTTGAGTGAGGTGACAATTAAGAAGAGGAAAAATCCAGAGATGTTCCCTATGATGAAGAACCCAAATGATTACACAAAAGTATTGTTGCTTTCATTGGGCTGTGGGGAAGCTGCTGTGAAGAATGAGTACAGTGCAGAAGACTCGGATTCATGGGGCGCTTTGAAATATATTTTCAATTTGAAGACTTCTTCGAGTCCCTTGATAGATTTTATGTTTGATGGAAACATGGACATGTCTGAGTATCACCTTGCTTCTCTTTTCCAAGGCATTCACGCCGAGGACAATTATCTTCGAATTCAGGATAATTCATTAACACCAGAGATGTCTAAAATGGACAACTCCAAACCAGAGAATTTGCAGAATCTTGAAAACTTCGGAGAGAATCTGTTAAGGAGTGTGACTAAAAAGTGGAACGTCAACACTTTTAAGCTTGAGGAAGTTCCCAACAAGGTTACAAATGAAATGAATCTCAGAAGGGTGGCGAAGATTCTGTACGAAGAGAGAAATAGGCGTTTGCAAGGAATGGCAAACCGGAAGATTCAATCCCGAGTAAGAAAATTAATGGCTGCTGAGAACGTTAAGCTTCCACTTCCTTCATATGGAAGTATTGTCACTGTTCTTAGTATTGATGGAGGTGGTGTCCGAGGTATCATTCCTGCTGTAATTCTTCGACGCCTCGAGGCTGAACTTCAGGAAGCAGCACTGGTGGACTCATCGCTGCCATGCTCCCAGCTCCTAACACAGAACCGTCCTATGTTCTCTGCTCCTGAAGTTGTTCAGTTCTACAAAGATGAATGTCCTAAAATTTTCCCTCAGAAAACATTTTCCAGTTGGAGGAAATGCCCAAATTTGAATGCTTTGTTGTCAGAGATATTGATAGCGACTTCAGCAGCACCAACCTATTTCCCACCGCATCGCTTTCAGAATGATGATGAAGACTTCCGTTTAACTGATGGTGGTTTAACCGCACTTAATCCGGGTATGGCAGCAATTAGTGAGGTGGCTCAACAGAAGAAGGCAAACCCTAAGATCTTGCCCATGATGAAGGATCCAAGTGACTTTACTAATTTGATGATGATATCTTTGGGATGTGGTACTGAACCTAAGAAAGCTACATACGATGCTCGAAAGGCATATTGGTGGGGTACCCTCCGTTGGATATTTGGTCCAGTCATTGAATTTATGAACGGAGGAAGTTATGACATGATTGATTATCACCTTCTTACTCTTTTTCGTTCAACTGAGTTAGATGACTTTTACCTTTGA 1977 0.4284 MPTIMASYSFLCVVSLLLSLTPNLSVASQIPKLPPPSHGTIITILSIDGGGLRGLIPAVVLRRLEAHLQEISNSEQLRIADFFDVIAGTSTGGLISEMLTAPDSNNRPLFHASEIVQFYKDEAAKIFPPHTPVNLLKPKYSNAYLRHITQKILNQTRLKDTLTNVVITAFDIKQLSPTLFSNYKLEEVPQLNALLSDIAMATSAAPAYLPPYLFENAGQQFHMIDGGVIATNPGMVALSEVTIKKRKNPEMFPMMKNPNDYTKVLLLSLGCGEAAVKNEYSAEDSDSWGALKYIFNLKTSSSPLIDFMFDGNMDMSEYHLASLFQGIHAEDNYLRIQDNSLTPEMSKMDNSKPENLQNLENFGENLLRSVTKKWNVNTFKLEEVPNKVTNEMNLRRVAKILYEERNRRLQGMANRKIQSRVRKLMAAENVKLPLPSYGSIVTVLSIDGGGVRGIIPAVILRRLEAELQEAALVDSSLPCSQLLTQNRPMFSAPEVVQFYKDECPKIFPQKTFSSWRKCPNLNALLSEILIATSAAPTYFPPHRFQNDDEDFRLTDGGLTALNPGMAAISEVAQQKKANPKILPMMKDPSDFTNLMMISLGCGTEPKKATYDARKAYWWGTLRWIFGPVIEFMNGGSYDMIDYHLLTLFRSTELDDFYL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0509 658 PANTHER XYLOSE ISOMERASE 431 513 - -
Lele39g0509 658 FunFam Patatin 35 414 - -
Lele39g0509 658 Pfam Patatin-like phospholipase 45 237 IPR002641 GO:0006629
Lele39g0509 658 SUPERFAMILY FabD/lysophospholipase-like 441 649 IPR016035 -
Lele39g0509 658 SUPERFAMILY FabD/lysophospholipase-like 42 378 IPR016035 -
Lele39g0509 658 Gene3D Cytosolic phospholipase A2 catalytic domain 434 514 - -
Lele39g0509 658 Gene3D Cytosolic phospholipase A2 catalytic domain 515 658 - -
Lele39g0509 658 Gene3D Cytosolic phospholipase A2 catalytic domain 36 413 - -
Lele39g0509 658 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 45 238 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0509 Lele-ChrLele39 4210763 4221956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0509 435 658 Acyl Lipid Metabolism Gene Families AT5G43590 29.316 1.34e-20 93.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0905 37 18935933 18943797 Lele39g0509 39 4210763 4221956 hybridization
Lele38g0828 38 20033399 20037864 Lele39g0509 39 4210763 4221956 hybridization