Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0299 ATGCGATTGTTGCGTCCATGGGCTAATCCCGTCAAGCTTCTCCTCTTGGCATGTCAAGAAAAGCCTTCAATTGCGAAGGTTCACGCTTTGATAATCTTGACAGGCACCTTCACCCAAAATAACATTAACAGGCATCTCATAGCATCTTATGCACGTATTGGTGATATCACTTCAGCCCGCAAAGTGTTTGATCAAATGTCTCAACGAGGCGTTGCTGTATGGAACGCTATGATTGTTGCATATTCTCGTCAAGGGTACCCAGATGAAGTTATGAATCTCTATCATAGGATGATTTTGGAAGGAGTTAGACCTGATAGTTCCATCTTTACAGTGGCATTGAAGGCGTGTACTAGGTTGCTCGATTTGAAAATGGGGAAGGAGATTTGGAGAAAAGCTGCTTATTGTGGGTATGGAAACGATGTCTTCGTTGGGTGTTCTGCGTTGAATATGTATGCAAAGTGTGGAAAGATGGTTGAAGCATTGGAACTGTTCGATAAAATGCCAAGGAAGGATATAGTTTGTTGGACGACAATGATATCTGGTTATGCTCAGTGTGGAAGAGCAATGGAAGCTCTTGATGTTTATAGAAAAATGCAAAAAGAGGGAATTGATGGAGATGGGGTTGTCATGCTGGGATTGGTTCAAGCTATTGCAAATCTGGGGGACTCCAGATTGCGTCTCTCAGTTCATGGGTATTTAATTAGACGATACATACCAATGGATGTTGTAATACAAACCAGTCTTGTAGATATGTATGCTAAAGCAGGACATCTAGAACATGCTTTTCAAGTGTTCTCAATGATGCCTCGCAAAAATATCATATCTTGGGCTGCTTTGATTTCAGGCTTAGCTCAAATTGGTTTTGCTGGAAACACGCTTGAATTGTTGATAGAGATGCAGAATCTAGGTTATGAACCTGACTTTGTTTGTCTTGTAAGTGCACTTCTTGCTTGTTCACAAATTGGCTGTCTCAAGTTGGGAAAATCCATCCATGGTTATCTCATGAAGAGACTAGATTTTGATCCAGTCTCTGGAACTGCGATTATTGATATGTATTCCAAATGTGGATCACTTTCTTCTGCACGTGCCCTTTTTGATCAGATAAGATTTAAGGATGCAGTTTCTTGGAATGCCATGATTTCCGCATGTGGAACCCATGGGAATGGGAAGGAAGCTCTATCAATGTTCCAACTGATGATCACCGAAACAAATACAAAACCAGATCATGCTACTTTTTCTGCTCTTCTCTCAGCTTTAAGCCACTCAGGTCTTGTGCAAGAAGGTCGATACTGTTTCAATCTCATGATCAATAAATTCAAGATACTTGCAAATGAGAAGCATTATGCTTGCATGATTGATCTCCTGGCTCGCGCAAGCCAAGTCGAAGAAGCTCTGAAACTGATAGATTCCATGAAAACTGAACCTGGGGTTGCTATATGGGTTGCTCTACTTGGTGGTTGCTGCAACTATGAGAAATTTTTTATTGGAGAGAAGGTGGCCAAGAAGGTTCTTGAGTTGAATCCAGATGATCCTGGAATATATGCTTTAATCTCTAACTTCTTTGCCAAGGCACGTAAGTGGGATGAAGTAGCTGAAGTGAAGAAGATGATGAACATGTCAGAAGTGAAAAAGGTCCCTGGATATAGTGTGGTTGAGGTGAATGGAAAGCAACATGCTTTTCTCATGGAAGATAAGAGTCACCATCTTTATAAGAATATTGCTTGTGTTTTGGATAATTTGGATCTTGAAATGAGAATGGCAGGTTATGTTACATTTGACGAATTTCTGCTGTTCGATCTGAAAGATGACACAAATGAGAAAGTTTACATCCCTGCAATTTCTGAGTTTCTTTGCGAGTTCAGCTCAGGAAGAAATGGCGGTAAGCAACGTTCTCAAGTACCGAGATCTGGTAGTTGGGAAAATGAAGATAATGTTCCTTATATAGGTTATTCTGAGAAGGCACAGAAAGATCGAACTGGCTCAGAGATGAATCCAAATGGTCCCCACGGAAATCCAGATTTAGCTCATGATAATTCATCTTCTTCCAATCTCCCACCCACTGAACCCATGGTTTATTCAGAGGATCAAACTGGAAAAGGATCAGTGAGATCTACACTTGAATTACAAAAGAGCAAGGATGATGCTGTTCCTAAGCCTGTTACTGACTCTCCAGCTCGTCAAGACAAGACGGGCAATAGAAGTGGCAATGATTCTACACACCGTCAGGGGCTAGGCTCTGCTGACACACGTCAAAAAACTGCAAGGCAAAGTGCTGTGTCTGAGTATAGTATTGAACGCTCACCATTTCATCGCCTGGCAAAGACCCCGGGCAGAGACAGTCCCTCTTGGGACGGAAAGAATTCCTATGACAGCAGCCATGGTACAACAGGAAGATCCCGACTAAGAACACCTAATCGAGGAGATGAATCTCCTGACAAAGCTGCTGCTGTTCCCAAATTTGGTGATTGGGATGAAAATGACCCTGCATCAGCTGATGGCTACACTCAACTTTTCAACAAAGTGAAGGAGGAGAGAGCTGGTGGTGGACAAGCGCCTGGCACACCCACCCAGAGACCATATGTTGTCCGAAACCGAGATACTAATGATAAAGTTAAGAGTTGCTGCTTTGGCTGGTTAGCAATGGCGTGGAGAGGGAATCTTTCTAAGTACCTGAAGGAGGTTCGGTTTCTGATGTGCCAGACATCACCTGCAAGCTCAACCGCAAGGGCATTTGTTGAGAAGAATTATAAGGAGCTAAAGACATTGAACCCCAAATTGCCAATATTGATCCGTGAATGCAGTGGGGTCGAACCCCAATTGTGGGCTAGATATGATTTGGGTGTTGAGAAAGGCATCAGATTGGAAGGTTTAACAGAGGAGCAGATTTCTAAGGCACTTCAAGATCTGGTAAAAGCTGGAGAGTCTTTGAAAGCTTGA 2937 0.4259 MRLLRPWANPVKLLLLACQEKPSIAKVHALIILTGTFTQNNINRHLIASYARIGDITSARKVFDQMSQRGVAVWNAMIVAYSRQGYPDEVMNLYHRMILEGVRPDSSIFTVALKACTRLLDLKMGKEIWRKAAYCGYGNDVFVGCSALNMYAKCGKMVEALELFDKMPRKDIVCWTTMISGYAQCGRAMEALDVYRKMQKEGIDGDGVVMLGLVQAIANLGDSRLRLSVHGYLIRRYIPMDVVIQTSLVDMYAKAGHLEHAFQVFSMMPRKNIISWAALISGLAQIGFAGNTLELLIEMQNLGYEPDFVCLVSALLACSQIGCLKLGKSIHGYLMKRLDFDPVSGTAIIDMYSKCGSLSSARALFDQIRFKDAVSWNAMISACGTHGNGKEALSMFQLMITETNTKPDHATFSALLSALSHSGLVQEGRYCFNLMINKFKILANEKHYACMIDLLARASQVEEALKLIDSMKTEPGVAIWVALLGGCCNYEKFFIGEKVAKKVLELNPDDPGIYALISNFFAKARKWDEVAEVKKMMNMSEVKKVPGYSVVEVNGKQHAFLMEDKSHHLYKNIACVLDNLDLEMRMAGYVTFDEFLLFDLKDDTNEKVYIPAISEFLCEFSSGRNGGKQRSQVPRSGSWENEDNVPYIGYSEKAQKDRTGSEMNPNGPHGNPDLAHDNSSSSNLPPTEPMVYSEDQTGKGSVRSTLELQKSKDDAVPKPVTDSPARQDKTGNRSGNDSTHRQGLGSADTRQKTARQSAVSEYSIERSPFHRLAKTPGRDSPSWDGKNSYDSSHGTTGRSRLRTPNRGDESPDKAAAVPKFGDWDENDPASADGYTQLFNKVKEERAGGGQAPGTPTQRPYVVRNRDTNDKVKSCCFGWLAMAWRGNLSKYLKEVRFLMCQTSPASSTARAFVEKNYKELKTLNPKLPILIRECSGVEPQLWARYDLGVEKGIRLEGLTEEQISKALQDLVKAGESLKA 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0299 978 TIGRFAM PPR: pentatricopeptide repeat domain 46 72 IPR002885 -
Lele39g0299 978 TIGRFAM PPR: pentatricopeptide repeat domain 173 203 IPR002885 -
Lele39g0299 978 TIGRFAM PPR: pentatricopeptide repeat domain 374 408 IPR002885 -
Lele39g0299 978 TIGRFAM PPR: pentatricopeptide repeat domain 245 273 IPR002885 -
Lele39g0299 978 TIGRFAM PPR: pentatricopeptide repeat domain 411 438 IPR002885 -
Lele39g0299 978 TIGRFAM PPR: pentatricopeptide repeat domain 448 474 IPR002885 -
Lele39g0299 978 TIGRFAM PPR: pentatricopeptide repeat domain 73 106 IPR002885 -
Lele39g0299 978 TIGRFAM PPR: pentatricopeptide repeat domain 147 173 IPR002885 -
Lele39g0299 978 MobiDBLite consensus disorder prediction 673 690 - -
Lele39g0299 978 MobiDBLite consensus disorder prediction 624 639 - -
Lele39g0299 978 Pfam Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain 908 958 IPR007741 -
Lele39g0299 978 MobiDBLite consensus disorder prediction 725 763 - -
Lele39g0299 978 Pfam PPR repeat family 371 420 IPR002885 -
Lele39g0299 978 Pfam PPR repeat family 71 116 IPR002885 -
Lele39g0299 978 Gene3D Tetratricopeptide repeat domain 122 224 IPR011990 GO:0005515
Lele39g0299 978 Gene3D Tetratricopeptide repeat domain 37 121 IPR011990 GO:0005515
Lele39g0299 978 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 16 597 - -
Lele39g0299 978 MobiDBLite consensus disorder prediction 624 832 - -
Lele39g0299 978 MobiDBLite consensus disorder prediction 802 820 - -
Lele39g0299 978 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Lele39g0299 978 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 225 325 - -
Lele39g0299 978 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 811 845 IPR008700 -
Lele39g0299 978 SMART L51_S25_CI_B8_2 900 973 IPR007741 -
Lele39g0299 978 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 170 IPR002885 -
Lele39g0299 978 FunFam Pentatricopeptide repeat-containing protein chloroplastic 123 224 - -
Lele39g0299 978 Pfam E motif 495 552 IPR046848 -
Lele39g0299 978 Gene3D Glutaredoxin 880 972 - -
Lele39g0299 978 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 407 IPR002885 -
Lele39g0299 978 FunFam NADH-ubiquinone oxidoreductase 10.5 kDa subunit 882 972 - -
Lele39g0299 978 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Lele39g0299 978 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 474 IPR002885 -
Lele39g0299 978 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Lele39g0299 978 SUPERFAMILY Thioredoxin-like 891 972 IPR036249 -
Lele39g0299 978 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 343 570 - -
Lele39g0299 978 Pfam PPR repeat 448 473 IPR002885 -
Lele39g0299 978 Pfam PPR repeat 346 369 IPR002885 -
Lele39g0299 978 Pfam PPR repeat 173 203 IPR002885 -
Lele39g0299 978 Pfam PPR repeat 246 273 IPR002885 -
Lele39g0299 978 Pfam PPR repeat 148 172 IPR002885 -
Lele39g0299 978 Pfam PPR repeat 274 303 IPR002885 -
Lele39g0299 978 MobiDBLite consensus disorder prediction 781 801 - -
Lele39g0299 978 Gene3D Tetratricopeptide repeat domain 344 571 IPR011990 GO:0005515
Lele39g0299 978 Gene3D Tetratricopeptide repeat domain 225 341 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0299 Lele-ChrLele39 2043955 2057199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0299 58 600 Glycoside Hydrolase AT3G49170 32.058 5.28e-88 298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1114 37 20798393 20803751 Lele39g0299 39 2043955 2057199 hybridization
Lele38g0994 38 21477695 21483780 Lele39g0299 39 2043955 2057199 hybridization