Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0120 ATGGAAGCTCTCAAGAGTTCTTGCTCTAAGGCTCTTTTTGGTGGCCTTGGATCTTCTTCTCTGAGGCTTGTTCCTTCCTTTCATTTCTCCGACAAGCTTCAATTTTCCTTATCCAATGATAAAGTCGGCAACTTTCGGCTCCTCCAAATGGTTCAAAACAAGGGTGCCTCGATTTCCCCAGTTCATGCCATGCCATCCGAACCCCAGGTGGAATTGGAAACGGAAGAGCCTCAAGCACAGCAAACTGAGGAAACGAAGGTTGTTCGGATCAAATTTCAGTTACAAAAAGATTGCAAGTTCGGCGAACAATTCCTTGTTGTAGGTGATGATCCTATGATTGGTGATTGGGATCCTTCAAATGCACTACCAATGACTTGGTCAGAAGGGCATAAATGGTTTGTTGAGATGGATGTGCCTTCTGGGAAATCAATCCAATACAAGTTTATTCTGAAATCAACATCTGGTGATATTGTTTGGCAGCCGGGGTCTGACCGAATTGTTAAGACTTGGGAAACTGTTAACAGAATCACTGTTTGTGAGGATTGGGAGAATGCTGAGCTTCAGAAAATAATAGAGGAAGATCAGTCCGATTACTCAAATGGGGAACCCCTGATTGATTCAGAAATGTCAAATTTTTCTGGGAATTTGGATCATCCCGAAGAAGAGACAGTATCTGATGCAACGGATGCACTAGACTTTGAAGGCATCAAAAATCATTTAGAGGAGAAACCACTTGCTCAACCAGACATGCAACAAGTTACAGATGATATTACTTCTTCTTCCATAGAGAAGCCAATGGCTATTGTTGCAGAAAATGTAGATTCATCGGAAGATGCCCCCAAGAATACGCCTCGCAGAAGAGGTGTGAACAATATGGCCCTTCAGAGTGAAGTTACAGTCCATGATCTTGAAAACATGGGAAAAGCTTCACAAATAAATAATCAGGAAAAGGAAGTTGTAAAGAGCAACCTATTTGAATTTGAAGGAAGTCCTGTTCTTGTACCTGGCTTGACTCCACCTAAAACTGGGGAAACAACTAATAATGATAAAGTTGAAGAGAGGATTACCATGGACACTTCAGTTGAAGAACTTGAAACCAAGGATCAGAACATGCCAGAGTTCAATGAGGAACAAGAAGAATCGGATGATGGGGTCCAGTTCAATGAGGAGGAGCAAGAAGAATCAGAAGATGCAAAACCCCAAGAGATAGCTGAAACACTCCTCAGTGATGAGCCAGAGCTGGTTGACAATGAATTTCAAGAGAAGTTTCATTCAACCACAGCAATAGTTAAAGTTCCTGAGGTTCACACGGCTCATGAAAATGTCTTGGAAAGTGACATTCAATGGGGCCGTGGAATATTAAAGACGCTTCTATCAAAGCTCGGATTGCTGAGAAAAATTCTTCAGTAG 1410 0.4199 MEALKSSCSKALFGGLGSSSLRLVPSFHFSDKLQFSLSNDKVGNFRLLQMVQNKGASISPVHAMPSEPQVELETEEPQAQQTEETKVVRIKFQLQKDCKFGEQFLVVGDDPMIGDWDPSNALPMTWSEGHKWFVEMDVPSGKSIQYKFILKSTSGDIVWQPGSDRIVKTWETVNRITVCEDWENAELQKIIEEDQSDYSNGEPLIDSEMSNFSGNLDHPEEETVSDATDALDFEGIKNHLEEKPLAQPDMQQVTDDITSSSIEKPMAIVAENVDSSEDAPKNTPRRRGVNNMALQSEVTVHDLENMGKASQINNQEKEVVKSNLFEFEGSPVLVPGLTPPKTGETTNNDKVEERITMDTSVEELETKDQNMPEFNEEQEESDDGVQFNEEEQEESEDAKPQEIAETLLSDEPELVDNEFQEKFHSTTAIVKVPEVHTAHENVLESDIQWGRGILKTLLSKLGLLRKILQ 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0120 469 MobiDBLite consensus disorder prediction 375 398 - -
Lele39g0120 469 SMART CBM_20_2 87 179 IPR002044 GO:2001070
Lele39g0120 469 MobiDBLite consensus disorder prediction 359 402 - -
Lele39g0120 469 CDD CBM20 89 182 - -
Lele39g0120 469 Gene3D Immunoglobulins 85 183 IPR013783 -
Lele39g0120 469 SUPERFAMILY Starch-binding domain-like 86 181 IPR013784 GO:0030246
Lele39g0120 469 FunFam Related to glucoamylase 80 184 - -
Lele39g0120 469 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 82 184 IPR002044 GO:2001070
Lele39g0120 469 MobiDBLite consensus disorder prediction 335 354 - -
Lele39g0120 469 Pfam Starch binding domain 88 174 IPR002044 GO:2001070
Lele39g0120 469 PANTHER STARCH-BINDING DOMAIN-CONTAINING PROTEIN 1 86 196 - -
Lele39g0120 469 MobiDBLite consensus disorder prediction 359 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0120 Lele-ChrLele39 809746 812555 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1286 37 22033377 22036445 Lele39g0120 39 809746 812555 hybridization
Lele38g1187 38 22901041 22903788 Lele39g0120 39 809746 812555 hybridization