Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0015 ATGGGGAACTGCATGGCTCGGCCTTCATCCAAGGATGACAATTCTGATCATCACGTGGACTTTGCTTCTGGGAATGTACAACTTATTACTTCCAAAGAATCTTGGGACCAGAAGATGGAAGAAGCAAGAAAGGATGGCAAAATTGTGATTGCAAACTTCAGTGCATCATGGTGCGGTCCATGTAAGATGATTGCGCCTTATTTCTGTGAGTTATCGGAGAAATATCCATCAATTATGTTCTTAGTAATTGACGTGGATGAACTCACTGACTTCAGCACTTCCTGGGATATCAAAGCCACTCCAACTTTCTTCTTTCTCAGAGATGGGAAACAGATTGACAAACTGGTAGGAGCCAACAAGCCTGAGCTGCTGAAGAAAATTGTTGCCATTACTGATTCAATAGTTCAGTGTCAATAA 417 0.4197 MGNCMARPSSKDDNSDHHVDFASGNVQLITSKESWDQKMEEARKDGKIVIANFSASWCGPCKMIAPYFCELSEKYPSIMFLVIDVDELTDFSTSWDIKATPTFFFLRDGKQIDKLVGANKPELLKKIVAITDSIVQCQ 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0015 138 Pfam Thioredoxin 29 127 IPR013766 -
Lele39g0015 138 ProSitePatterns Thioredoxin family active site. 50 68 IPR017937 -
Lele39g0015 138 ProSiteProfiles Thioredoxin domain profile. 6 132 IPR013766 -
Lele39g0015 138 SUPERFAMILY Thioredoxin-like 21 127 IPR036249 -
Lele39g0015 138 FunFam Thioredoxin 22 132 - -
Lele39g0015 138 Gene3D Glutaredoxin 1 138 - -
Lele39g0015 138 PRINTS Thioredoxin family signature 57 66 - -
Lele39g0015 138 PRINTS Thioredoxin family signature 96 107 - -
Lele39g0015 138 PRINTS Thioredoxin family signature 49 57 - -
Lele39g0015 138 CDD TRX_family 33 129 - -
Lele39g0015 138 PANTHER THIOREDOXIN 26 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0015 Lele-ChrLele39 120452 123267 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1409 37 22817954 22824376 Lele39g0015 39 120452 123267 hybridization
Lele38g1285 38 23613593 23618620 Lele39g0015 39 120452 123267 hybridization