Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0435 ATGCGTTTCTTGTCTCTTCCTCTTTCTGTCAACTTTGCTCAGTGTACCAACACTTCTATGGCGTCCGGGTCGGCTTCTCTAATGTGGTTCCGAAAGGGTCTTAGGATCCATGACAACCCGGCCCTGGATTTTGCCCGCCAAGGTTCGGATCTTATTTACCCTGTCTTCGTTATCGACCCGCATTACATGGAGCCCGACCCCAATGCATTTTCCCCCGGTTCCACTCGTGCCGGTCTCAACCGGATTAAGTTCCTGCTTGAAAGCCTTGTGGACCTTGATTTGAACCTTAAGAAGCTCGGATCGCGACTGCTCATTCTTAAGGGTGAACCAGGAAAGGTTTTGATTCAATGCTTGGAGGAGTGGAACATCAGAAAGCTTTGCTTTGAATATGACACTGATCCTTATTATCAGGCTTTAGATACTAAAGTTAAGAACTTTGCAGTGGCTGCTGGGATTGAGGTTTTCTCTCCTGTGAGTCACACGCTCTTCAATCCAGCGGATATTATACAGAAGAATGGAGGGAAGCTACCTCTTAGTTATCAATCGTTTGTGAAGATTGCTGGACAACCGTCATGCCCTCTCTTAACTATGGTTTCCTCACTTCCTCCGGTTGGAGATCTTGGAAGTTGTGAGATTTCTGAAGTTCCAACTATCGAAGAACTCGGATATGGAAATTTTAAACAGGAAGAATTCTCTCCTTTCAAAGGTGGTGAATCAGAAGCATTGAAGAGGCTGACAGGGTGCATGAAGAAAAAGGAGTTTGTGGCCAACTTTGAGAAACCCAAGGGTAATCCATCTGCATTTCTTAGACCAGAAACAACTGTTCTATCACCTTATTTGAAATTTGGTTGTTTATCCTCCAGATATTTCTACCAACGGATTCAAGATGTGTATAAAACTATGCCAAAGCATACATCACCACCTGTTTCTCTTCTAGGACAGTTGTTATGGCGAGACTTCTTCTACACTGTTGCATTTGGGACTCCTAATTTTGATAAGATGAAAGGCAATAGAATATGCAAGCAGATACCTTGGAAGATTGATGACAAACTTCTGGAAGCATGGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCCATCATGGTTCAGCTACGTCAATGGGGTTGGATGCACCATCTGGCACGACATTCTGTTGCGTGTTTTCTTACTCGTGGCGACCTGTTTGTTCATTGGGAAAAAGGGCGTGACGTCTTTGAGAGGCTTCTTGTTGATTCAGATTGGGCAATTAATAATGGAAACTGGCTTTGGCTCTCATGTTCATCCTTCTTTTATCAGTATAATCGTATTTACTCACCAATCTCATTTGGTAAAAAGTATGATCCTAAAGGAGACTACATCAGGCATTTTCTTCCTGTCTTAAAAGATATGCCTAAGGAATACATTTATGAACCGTGGACTGCTCCTCTAAGCGTTCAGAAGAAAGCAGACTGCATTATAGGCAAAGACTACCCAATGCCAGTTGTGTCTCATGATTCTGCGATCAAAGAGTGCCGAAGAAGAATGGCTGAGGCATATGCGTTGAACAAGGAATTGAATGATTCAGTAAGCGAAGAAGATCTGAAAAACTTAAGGAGGAAACTTGATGAGGCAACGGAAGAGAAAGAGACTAAACATAAAAGATATAGACAGAAGCTGATTGGTTGA 1668 0.4305 MRFLSLPLSVNFAQCTNTSMASGSASLMWFRKGLRIHDNPALDFARQGSDLIYPVFVIDPHYMEPDPNAFSPGSTRAGLNRIKFLLESLVDLDLNLKKLGSRLLILKGEPGKVLIQCLEEWNIRKLCFEYDTDPYYQALDTKVKNFAVAAGIEVFSPVSHTLFNPADIIQKNGGKLPLSYQSFVKIAGQPSCPLLTMVSSLPPVGDLGSCEISEVPTIEELGYGNFKQEEFSPFKGGESEALKRLTGCMKKKEFVANFEKPKGNPSAFLRPETTVLSPYLKFGCLSSRYFYQRIQDVYKTMPKHTSPPVSLLGQLLWRDFFYTVAFGTPNFDKMKGNRICKQIPWKIDDKLLEAWREARTGFPWIDAIMVQLRQWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLVDSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYDPKGDYIRHFLPVLKDMPKEYIYEPWTAPLSVQKKADCIIGKDYPMPVVSHDSAIKECRRRMAEAYALNKELNDSVSEEDLKNLRRKLDEATEEKETKHKRYRQKLIG 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0435 555 Pfam DNA photolyase 26 186 IPR006050 -
Lele38g0435 555 Pfam FAD binding domain of DNA photolyase 313 510 IPR005101 -
Lele38g0435 555 Coils Coil 502 552 - -
Lele38g0435 555 Gene3D HUPs 27 236 IPR014729 -
Lele38g0435 555 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 329 554 - -
Lele38g0435 555 PANTHER CRYPTOCHROME 25 516 IPR002081 -
Lele38g0435 555 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 24 162 IPR006050 -
Lele38g0435 555 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 226 516 IPR036134 -
Lele38g0435 555 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 23 209 IPR036155 -
Lele38g0435 555 FunFam Cryptochrome-1 329 551 - -
Lele38g0435 555 Gene3D - 160 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0435 Lele-ChrLele38 3546627 3550225 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0435 38 3546627 3550225 Lele38g0435 38 3546627 3550225 ECH
Lele38g0435 38 3546627 3550225 Lele39g0957 39 18407674 18412773 hybridization
Lele38g0435 38 3546627 3550225 Lele40g0409 40 3376116 3386125 hybridization