Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0228 ATGGTCCTGGCGAAAGAAATCATGGGTTCTTCTTTGATCGAGAGATCTTCATTTGCTTCTTCATCAAAATTGCGCCTTGGTGACCATAGTTTTCAGCAGAAGCAGAGGCGGTTCTTGGTGATGAGCCCTTTCGCGGTTCCACTGGAGAAGAATAGACGAGCAGGGAGGTTGACAAAAGCTGTGAAGAAGAACACTGTTGCAGCTATTAGTGAAGATTTGGTCAAGTCCTCGTCTTCTTCTTCTTCTTCAACTTCTTCTGTTCCTGCTGAGAAAGCAGTGGCATTCAAGGTTAGAGCTGTAGTTACTGTTAGGAACAAGATCAAAGAGGATTTTAAGGAGACTCTTGTCAAGCATTTGGACGCCATTACTGACAGAATAGGAAGGAATGTTGTTTTGGAACTTGCCAGCACTGAGATTGACGCAAAAACGAAAGCCCCAAAGAAGAGCAATGAAGCTGTGCTAAAAGACTGGTCAAAGAAAATAAATGTGAAAGCAGAGCGAGTGAATTACACAGCAGAGTTCATGGTGGATTCAGATTTTGGAGAACCAGGAGCGATCACAGTGACGAACAAGCACCAACAAGAGTTCTTCATGGAAAGCATAACCATAGAAGGATTTGCTTGTGGTCCTGTTCATTTCCCCTGTAATTCCTGGGTTCAAGCCAAGAAAGATCATCCTGGAAAAAGGATATTCTTTTCAAACAAGCCATATCTACCCCATGAGACACCAGCTGGGCTAAGAATACTGAGAGAGAAGGAACTGAGAAGTATAAGAGGTGACGGCTCAGGTGTTCGTAAATTATCAGACAGAATATATGACTTTGCCACCTACAATGATCTGGGCAATCCAGATAAAGGCACCGACCTCGCTCGACCTATTCTTGGAGGCTCAGAAAAATATCCTTACCCGAGACGATGTCGTACCGGCCGCCTCCCTACCGACACCGATATGAATGCGGAGAGCCGTGTGGAGAAGCCACTGCCAATGTATGTTCCAAGAGATGACAGATTTGAGGAGTCAAAGCAGAACACATTTGCAGTGAAGAAGTTGAAGGCTGTGCTTCATAACTTGATCCCTGGGCTCAAGGCAAGCCTCTCTGCAAATAACAAAGACTTCAACGAATTCTCAGACGTTGATGGATTGTATAGTGAAGGTCTTCTTATTAAACTGGGTTTGCAAGATGAAGTTCTCAACAAAATCCCTTTGATCCGCAAGATCCATGAATCTAGTCAAGGCCTTCTTAAGTACGACACTCCCAAGATTATTTCTAAGGACAAGTTTGCGTGGCTGCGAGATGACGAATTTGCCCGTCAAGCAATCGCAGGAATCAACCCTGTCAACATTGAGAAGCTTGAGGTTTTCCCTCCTGTGAGCCAGCTTGACCCTCAAGTTTATGGCCCTCAAGAATCTGCCCTCAAAGAGGAGCACATTTTGGGTCAACTTAGTGGCATGACTGTTCAACAGGCAATAGATGAAGATAAGCTGTTCATCATAGACTACCACGATGTCTACCTTCCGTTTCTTGATGGGATTAATGCCCTTGATGGTAGAAAATCCTACGCTACTCGCACCATCTTCTTCTTGACCCCCATGGGAACTCTCAAGCCCATTGCTATAGAGCTTAGCCTCCCGCCGGTCGGACCATGTTCCCGATCAAAACGCGTAATCACGCCCCCGGTTGACGCCACCACCAACTGGGTGTGGCAGCTTGCTAAGGCCCATGTCTGTTCCAATGATGCTGGTGTGCATCAACTTGTTAACCATTGGCTACGGACACATGCGTGCATGGAGCCGTTTATATTGGCAGCACACAGGCAATTAAGTGCGATGCATCCAATATTCAAGCTATTGGATCCTCACATGAGGTATACACTTGAGATCAATGCCTTGGCTCGTCAAAGTCTTATCAATGCAGATGGAATCATTGAGTCTTGCTTCACTCCTGGACGCTACTGCATGGAAATCAGTTCTGCTGCTTACAAAAACTTTTGGCGCTTTGACATGGAGGGCCTCCCTGCTGATCTCATCCGCAGGGGAATGGCAGTTCCTGATCCAACTCAACCTCATGGTCTGAGGCTGCTCATAGAAGACTACCCTTATGCCGCTGACGGACTCATGATCTGGTCAGCCATACAGAACTGGGTTCGCACCTATGTGAACCATTATTACCCTGACCCTAACCTTGTGGCTCAAGACAAGGAGCTTCAAGCTTGGTACTTAGAGTCCATCAATGTGGGTCATGCTGACCTCAAACATGAACCATGGTGGCCACCATTGAACACGAGTGACGACCTCGTCTCCATCCTCACAACCTTGATTTGGAACGCTTCTGCACAGCATGCTGCCCTTAACTTCGGGCAGTACCCTTATGGAGGGTACGTTCCCAATCGCCCTCCAATGATGAGAAGACTAATACCTGATGAGAGTGACCCAGAATATGCCAGTTTCCTAGCTGACCCTCAGAAATACTTCCTCAATGCCATGTCTAGCTTGTTGCAAGCCACCAAATTTATGGCTATTGTTGATACTCTGTCCACTCACTCGCCGGACGAGGAGTACCTCGGGGAGCGGCAGCAACCATCGATCTGGTCCGGCGACACCGAGATGGTGGAGGCATTCTACGGGTTCTCAGCAAAGATCATGCAGATAGAGAAAGAGATTGACAACAGGAACCGTGACAGAACACTGAGGAACCGATGTGGTGCTGGAGTGTTACCTTATGAGTTGCTTGCTCCAAGCTCAGAACCTGGCGTTACATGTAGAGGTGTTCCAAACAGCGTATCCACATGA 2790 0.4713 MVLAKEIMGSSLIERSSFASSSKLRLGDHSFQQKQRRFLVMSPFAVPLEKNRRAGRLTKAVKKNTVAAISEDLVKSSSSSSSSTSSVPAEKAVAFKVRAVVTVRNKIKEDFKETLVKHLDAITDRIGRNVVLELASTEIDAKTKAPKKSNEAVLKDWSKKINVKAERVNYTAEFMVDSDFGEPGAITVTNKHQQEFFMESITIEGFACGPVHFPCNSWVQAKKDHPGKRIFFSNKPYLPHETPAGLRILREKELRSIRGDGSGVRKLSDRIYDFATYNDLGNPDKGTDLARPILGGSEKYPYPRRCRTGRLPTDTDMNAESRVEKPLPMYVPRDDRFEESKQNTFAVKKLKAVLHNLIPGLKASLSANNKDFNEFSDVDGLYSEGLLIKLGLQDEVLNKIPLIRKIHESSQGLLKYDTPKIISKDKFAWLRDDEFARQAIAGINPVNIEKLEVFPPVSQLDPQVYGPQESALKEEHILGQLSGMTVQQAIDEDKLFIIDYHDVYLPFLDGINALDGRKSYATRTIFFLTPMGTLKPIAIELSLPPVGPCSRSKRVITPPVDATTNWVWQLAKAHVCSNDAGVHQLVNHWLRTHACMEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLINADGIIESCFTPGRYCMEISSAAYKNFWRFDMEGLPADLIRRGMAVPDPTQPHGLRLLIEDYPYAADGLMIWSAIQNWVRTYVNHYYPDPNLVAQDKELQAWYLESINVGHADLKHEPWWPPLNTSDDLVSILTTLIWNASAQHAALNFGQYPYGGYVPNRPPMMRRLIPDESDPEYASFLADPQKYFLNAMSSLLQATKFMAIVDTLSTHSPDEEYLGERQQPSIWSGDTEMVEAFYGFSAKIMQIEKEIDNRNRDRTLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVST 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0228 929 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 236 929 IPR013819 GO:0016702|GO:0046872
Lele38g0228 929 PANTHER LIPOXYGENASE 97 928 IPR000907 GO:0016702|GO:0034440|GO:0046872
Lele38g0228 929 SUPERFAMILY Lipoxigenase 238 928 IPR036226 -
Lele38g0228 929 Pfam PLAT/LH2 domain 148 232 IPR001024 GO:0005515
Lele38g0228 929 ProSitePatterns Lipoxygenases iron-binding region signature 2. 610 620 IPR020834 GO:0016702|GO:0046872
Lele38g0228 929 ProSitePatterns Lipoxygenases iron-binding region signature 1. 583 597 IPR020833 GO:0016702|GO:0046872
Lele38g0228 929 Gene3D - 341 426 IPR027433 -
Lele38g0228 929 PRINTS Plant lipoxygenase signature 229 250 IPR001246 GO:0016491
Lele38g0228 929 PRINTS Plant lipoxygenase signature 453 472 IPR001246 GO:0016491
Lele38g0228 929 PRINTS Plant lipoxygenase signature 520 544 IPR001246 GO:0016491
Lele38g0228 929 PRINTS Plant lipoxygenase signature 414 430 IPR001246 GO:0016491
Lele38g0228 929 PRINTS Plant lipoxygenase signature 268 284 IPR001246 GO:0016491
Lele38g0228 929 PRINTS Plant lipoxygenase signature 301 320 IPR001246 GO:0016491
Lele38g0228 929 PRINTS Plant lipoxygenase signature 369 390 IPR001246 GO:0016491
Lele38g0228 929 PRINTS Plant lipoxygenase signature 203 221 IPR001246 GO:0016491
Lele38g0228 929 PRINTS Plant lipoxygenase signature 841 855 IPR001246 GO:0016491
Lele38g0228 929 FunFam Lipoxygenase 428 560 - -
Lele38g0228 929 Gene3D PLAT/LH2 domain 82 237 - -
Lele38g0228 929 Gene3D - 562 928 - -
Lele38g0228 929 Gene3D - 238 340 - -
Lele38g0228 929 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 95 237 IPR036392 GO:0005515
Lele38g0228 929 FunFam Lipoxygenase 238 340 - -
Lele38g0228 929 ProSiteProfiles PLAT domain profile. 111 233 IPR001024 GO:0005515
Lele38g0228 929 SMART LH2_4 95 234 IPR001024 GO:0005515
Lele38g0228 929 Gene3D - 427 560 - -
Lele38g0228 929 FunFam Lipoxygenase 562 928 - -
Lele38g0228 929 PRINTS Lipoxygenase signature 583 600 IPR013819 GO:0016702|GO:0046872
Lele38g0228 929 PRINTS Lipoxygenase signature 603 623 IPR013819 GO:0016702|GO:0046872
Lele38g0228 929 PRINTS Lipoxygenase signature 565 582 IPR013819 GO:0016702|GO:0046872
Lele38g0228 929 CDD PLAT_LH2 95 234 IPR042057 -
Lele38g0228 929 Pfam Lipoxygenase 246 912 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0228 Lele-ChrLele38 1790346 1795725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0228 1 928 Acyl Lipid Metabolism Gene Families AT1G17420 72.650 0.0 1420
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0228 38 1790346 1795725 Lele38g0228 38 1790346 1795725 ECH
Lele38g0228 38 1790346 1795725 Lele39g1199 39 20694242 20698976 hybridization
Lele38g0228 38 1790346 1795725 Lele40g0216 40 1675089 1682309 hybridization