Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1199 ATGGGTTCTTCTTTGATCGAGAGATCTTCATTTGCATCTTCATCAAAATTGATCCCTGGTGGCCATAGTTTTCAGCAGAAGCAGTTCTTGGGGAGCCCTTTTATGGTTCCTCTGGAGAACAATAGACGAGCAGTGAGGTTGACGAAAGCTGTGAAGAAGAACAACACTGTGGCGGCTATCAGGGAAGATTTGGTCAAGTCCTCGTCTTCTTCTTCTTCTTCTTCTTCTGCAGTTCCTGCTGAGAAAGCAGTGGCATTCAAGGTTAGAGCTGTAGTTACTGTTAGGAACAAGATCAAAGAGGATTTTAAGGAGACTCTTGTCAAGCATTTGGATGCAATTACTGACAGAATAGGAAGGAATGTTGTTTTGGAACTTGTCAGTACTGAGATTGACGCAAAGACGAAAGCCCCAAAGAAGAGCAGTGAAGCTGTGCTAAAAGACTGGTCAAAGAAAATGAATGTGAAAGCAGAGACAGTGAATTACAACGCAGAGTTCATGGTGGACTCAGATTTTGGAGAACCAGGAGCGATCACAGTGACGAACAAGCACCAACAAGAGTTCTTCATGGAAAGCATAACCATAGAAGGATTTGCTTGTGGTCCTGTTCATTTCCCCTGTAATTCCTGGGTTCAAGCCAAGAAAGATCATCCTGGCAAGAGGATATTCTTTTCAAACAAGCCATATCTACCCCATGAGACACCAGCTGGGCAAAGAATACTGAGAGAGAAGGAACTGAGGAATCTAAGAGGTGACGGCTCAGGTGTTCGTAAATTATCAGACAGAATATATGACTTTGCCACCTACAATGATCTGGGCAATCCAGATAAAGGCACCGACCTCGCCAGACCCATTCTTGGAGGCTCAGAAAAATATCCTTACCCAAGACGATGTCGTACCGGCCGCCTACCCACCGACACCGATATGAATGCGGAGAGCCGCGTGGAGAAGCCACTGCCAATGTATGTTCCAAGGGATGAGAGATTTGAGGAGTCAAAGCAGAACACCTTTGCAGTGAAGAGGTTGAAGGCTGTGCTTCATAACTTGATCCCTGGGCTCAAAGCCAGCCTCTCTGCTAATAACAAAGACTTCAATGAATTCTCAGCCGTTGATGGATTATACAGTGAAGGTCTTCTCATCAAACTAGGTTTGCAAGATGAAGTTCTCAACAAAATCCCTCTCATCCGCAAGATTCATGAATCTAGTCAGGGCCTTCTTAAGTACGACACTCCTAAGATTATTTCCAAGGACAAGTTTGCGTGGTTGCGAGATGACGAATTTGCCCGTCAAGCAATTGCAGGAATCAATCCTGTCAACATTGAGAAGCTTAAGGTTTTCCCACCTGTGAGCCAGCTTGACCCTCAAGTTTATGGCCCTCAAGAATCTGCCCTCAAAGAGGAGCACATTTTGGGTCAACTTAATGGCATGACCGTTCAACGGGCAATAGATGAAGATAAGTTGTTCATCATAGACTACCACGATATCTACCTTCCGTTTTTGGATGGGATTAATGCCCTTGATGGTAGAAAATCGTACGCTACTCGCACCATCTTCTTCTTGACAGCCATGGGAACTCTCAAGCCCGTTGCTATAGAGCTCAGCCTCCCGCCGTCCGGACCAAGTTCCCGATCAAAACGCGTTGTCACGCCCCCTGTGGACGCCACCACCAACTGGATGTGGCAGCTTGCTAAGGCCCACGTCTGTTCCAATGACGCCGGTGTGCATCAACTTGTTAACCACTGGCTACGGACACATGCGTGCATGGAGCCGTTTATATTGGCAGCACACAGGCAATTAAGTGCGATGCACCCAATATTCAAGCTATTGGATCCTCACATGAGGTACACACTCGAGATCAATGCCTTGGCTCGTCAAAGTCTGATCAACGCAGATGGAATCATTGAGTCTTGCTTCACTCCCGGACGCTACTGCATGGAAATCAGTTCTGCTGCTTACAAAAACTTTTGGCGCTTTGACATGGAGAGCCTCCCTGCTGATCTCATCCGCAGGGGAATGGCAGTTCCTGATCCAACCCAACCTCATGGTCTGAGGCTGCTCATAGAGGACTACCCTTATGCTGCTGATGGACTCATGATCTGGTCCGCCATACAGAACTGGGTTCGCGCCTATGTGAACCATTATTACACTGACCCTAACCTTGTGGCTCAAGACAAGGAGCTTCAAGCCTGGTATCTAGAGTCCATCAATGTGGGTCATGCTGACCTCAAACATGAACCATGGTGGCCACCATTGAACACGAGTGACGACCTCGTCTCCATCCTCACAACCTTGATTTGGAACGCTTCTGCACAGCACGCTGCCCTTAACTTCGGGCAGTACCCTTATGGAGGGTACGTGCCCAATCGCCCACCAATGATGAGAAGACTAATCCCTGATGAGAGTGACCCAGAATATGCCAGTTTCCTAGCAGACCCTCAGAAATACTTCCTCAATGCCATTCCTAGCTTGTTGCAAGCCACCAAATTTATGGCCGTGGTTGATACTCTGTCCACTCACTCGCCGGACGAGGAGTACCTCGGGGAGCGGCAGCAACCATCGATCTGGTCCGGTGACACCGAGATGGTGGAGGCGTTCTATGGGTTCTCGGCTAAGATCATGCAGATAGAGAAGGAGATTGACAAGAGGAACCGTGACAGGACACTGAGGAACCGATGTGGTGCTGGAGTGTTACCTTATGAGTTGCTTGCTCCAAGCTCAGAACCTGGCGTTACATGTAGAGGTGTTCCAAACAGCGTGTCCACATGA 2763 0.4803 MGSSLIERSSFASSSKLIPGGHSFQQKQFLGSPFMVPLENNRRAVRLTKAVKKNNTVAAIREDLVKSSSSSSSSSSAVPAEKAVAFKVRAVVTVRNKIKEDFKETLVKHLDAITDRIGRNVVLELVSTEIDAKTKAPKKSSEAVLKDWSKKMNVKAETVNYNAEFMVDSDFGEPGAITVTNKHQQEFFMESITIEGFACGPVHFPCNSWVQAKKDHPGKRIFFSNKPYLPHETPAGQRILREKELRNLRGDGSGVRKLSDRIYDFATYNDLGNPDKGTDLARPILGGSEKYPYPRRCRTGRLPTDTDMNAESRVEKPLPMYVPRDERFEESKQNTFAVKRLKAVLHNLIPGLKASLSANNKDFNEFSAVDGLYSEGLLIKLGLQDEVLNKIPLIRKIHESSQGLLKYDTPKIISKDKFAWLRDDEFARQAIAGINPVNIEKLKVFPPVSQLDPQVYGPQESALKEEHILGQLNGMTVQRAIDEDKLFIIDYHDIYLPFLDGINALDGRKSYATRTIFFLTAMGTLKPVAIELSLPPSGPSSRSKRVVTPPVDATTNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACMEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLINADGIIESCFTPGRYCMEISSAAYKNFWRFDMESLPADLIRRGMAVPDPTQPHGLRLLIEDYPYAADGLMIWSAIQNWVRAYVNHYYTDPNLVAQDKELQAWYLESINVGHADLKHEPWWPPLNTSDDLVSILTTLIWNASAQHAALNFGQYPYGGYVPNRPPMMRRLIPDESDPEYASFLADPQKYFLNAIPSLLQATKFMAVVDTLSTHSPDEEYLGERQQPSIWSGDTEMVEAFYGFSAKIMQIEKEIDKRNRDRTLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVST 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1199 920 Gene3D - 332 417 IPR027433 -
Lele39g1199 920 ProSiteProfiles PLAT domain profile. 102 224 IPR001024 GO:0005515
Lele39g1199 920 Gene3D - 418 551 - -
Lele39g1199 920 SMART LH2_4 86 225 IPR001024 GO:0005515
Lele39g1199 920 CDD PLAT_LH2 86 225 IPR042057 -
Lele39g1199 920 PANTHER LIPOXYGENASE 88 919 IPR000907 GO:0016702|GO:0034440|GO:0046872
Lele39g1199 920 ProSitePatterns Lipoxygenases iron-binding region signature 2. 601 611 IPR020834 GO:0016702|GO:0046872
Lele39g1199 920 Gene3D PLAT/LH2 domain 73 228 - -
Lele39g1199 920 Gene3D - 553 919 - -
Lele39g1199 920 FunFam Lipoxygenase 419 551 - -
Lele39g1199 920 SUPERFAMILY Lipoxigenase 229 919 IPR036226 -
Lele39g1199 920 Pfam PLAT/LH2 domain 144 223 IPR001024 GO:0005515
Lele39g1199 920 FunFam Lipoxygenase 553 919 - -
Lele39g1199 920 PRINTS Plant lipoxygenase signature 360 381 IPR001246 GO:0016491
Lele39g1199 920 PRINTS Plant lipoxygenase signature 259 275 IPR001246 GO:0016491
Lele39g1199 920 PRINTS Plant lipoxygenase signature 292 311 IPR001246 GO:0016491
Lele39g1199 920 PRINTS Plant lipoxygenase signature 220 241 IPR001246 GO:0016491
Lele39g1199 920 PRINTS Plant lipoxygenase signature 405 421 IPR001246 GO:0016491
Lele39g1199 920 PRINTS Plant lipoxygenase signature 194 212 IPR001246 GO:0016491
Lele39g1199 920 PRINTS Plant lipoxygenase signature 444 463 IPR001246 GO:0016491
Lele39g1199 920 PRINTS Plant lipoxygenase signature 511 535 IPR001246 GO:0016491
Lele39g1199 920 PRINTS Plant lipoxygenase signature 832 846 IPR001246 GO:0016491
Lele39g1199 920 FunFam Lipoxygenase 229 331 - -
Lele39g1199 920 Pfam Lipoxygenase 239 903 IPR013819 GO:0016702|GO:0046872
Lele39g1199 920 Gene3D - 229 331 - -
Lele39g1199 920 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 86 228 IPR036392 GO:0005515
Lele39g1199 920 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 227 920 IPR013819 GO:0016702|GO:0046872
Lele39g1199 920 ProSitePatterns Lipoxygenases iron-binding region signature 1. 574 588 IPR020833 GO:0016702|GO:0046872
Lele39g1199 920 PRINTS Lipoxygenase signature 594 614 IPR013819 GO:0016702|GO:0046872
Lele39g1199 920 PRINTS Lipoxygenase signature 574 591 IPR013819 GO:0016702|GO:0046872
Lele39g1199 920 PRINTS Lipoxygenase signature 556 573 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1199 Lele-ChrLele39 20694242 20698976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1199 1 919 Acyl Lipid Metabolism Gene Families AT1G17420 73.139 0.0 1409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1199 39 20694242 20698976 Lele39g1199 39 20694242 20698976 ECH
Lele37g0226 37 1756884 1761776 Lele39g1199 39 20694242 20698976 hybridization
Lele38g0228 38 1790346 1795725 Lele39g1199 39 20694242 20698976 hybridization