Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0216 ATGGTCCTAGCGAAAGAAATCATGGGCTCTTCTTTGATCGAGAGATCTTCATTTGCTTCTTCATCAAAATTGCGCCTTGGGGACCATAGTTTGCAGCAGAAGCAGAGGCGGTTCTTGGTGATGAGCCCTTTCGCGGTTCCACTGGAGAAGAATAGACGAGCAGGGAGGTTGACAAAAGCTGTGAAGAAGAAAACTGTTGCAGCTATTAGTGAAGATTTGGTCAAGTCCTCGTCTTCTCCTCCTCCTCCTCCTTCAACTTCTTCTGTTCCTGCTGAGAAAGCAGTGGCATTCAAGGTTAGAGCTGTAGTTACTGTTAGGAACAAGATCAAAGAGGATTTTAAGGAGACTCTTGTCAAGCATTTGGACGCCATCACTGACAGAATAGGAAGGAATGTTGTTTTGGAACTTGTCAGCACTGAGATTGACGCAAGTAAGGCGGACACCAAACTGATGGTGACTGTTGTGTTTGATTGTGCAGAAACGAAGGCCCCAAAGAAGAGCAATGAAGCTGTGCTAAAAGACTGGTCAAAGAAAATGAATGTGAAAGCAGAGAGAGTGAATTACACAGCAGAGTTCATGGTGGATTCAGATTTTGGAGAACCAGGAGCGATCACAGTGACGAACAAGCACCAACAAGAGTTCTTCATAGAAAGCATAACCATAGAAGGATTTGCTTGTGGGCCTGTTCATTTCCCCTGTAATTCCTGGGTTCAAGCCAAGAAAGATCATCCTGGTAAAAGGATATTCTTTTCAAACAAGCCATATCTATCCCACGAGACACCAGCTGGGCTAAGAATACTGAGAGAGAAGGAACTGAGAAGTATAAGAGGTGACGGCTCAGGTGTTCGTAAATTATCAGACAGAATATATGACTTTGCCACCTACAATGATCTGGGCAATCCGGATAAAAGCACCGGCCTCGCTCGACCCATTCTTGGAGGCTCAGAAAAATATCCTTACCCGAGACGATGTCGTACCGGCCGCCTCCCCACGGACACCGATATGAATGCTGAGAGCCGTGTGGAGAAGCCCCTGCCAATGTATGTTCCAAGAGATGAGAGATTTGAGGAGTCAAAGCAGAACACATTTGCAGTGAAGAAGTTGAAGGCTGTGCTTCATAACTTGATCCCTGGGCTCAAAGCAAGCCTCTCTGCAAAAAGCAAAGACTTCAACGAATTCTCAGACATTGAAGGATTGTATAGTGAAGGTCTTCTTATTAAACTGGGTTTTCAAGATGAAGTTCTCAACAAAATCCCTTTGATCCGCAAGATCCATGAATCTAGTCAAGGCCTTCTTAAGTACGACACTCCCAAGATTATTTCCAAGGACAAGTTTGCGTGGCTGCGAGATGACGAATTTGCCCGTCAAGCAATCGCAGGAATCAACCCTGTCAACATTGAGAAGCTTGAGGTTTTCCCTCCTGTGAGCCAGCTTGACCCTCAACGATTTGTGGTGAGGACAAAGAGCGTAGAATATATGCCATTCTTACTTTCGTTGTGCATGTTTTTAAACGGTGGCATTCGGCTGCTGTATGCCATCCTTGAAAATGATTGGATCTTGGGGTTGGTGGTGTACGCAATGTACAGAAGTCCTAAATCTTCCAACAAATTCAATCAAGACGAGGAGCAACATGATGATCCTCTCATCTCATCCTCATGA 1659 0.4503 MVLAKEIMGSSLIERSSFASSSKLRLGDHSLQQKQRRFLVMSPFAVPLEKNRRAGRLTKAVKKKTVAAISEDLVKSSSSPPPPPSTSSVPAEKAVAFKVRAVVTVRNKIKEDFKETLVKHLDAITDRIGRNVVLELVSTEIDASKADTKLMVTVVFDCAETKAPKKSNEAVLKDWSKKMNVKAERVNYTAEFMVDSDFGEPGAITVTNKHQQEFFIESITIEGFACGPVHFPCNSWVQAKKDHPGKRIFFSNKPYLSHETPAGLRILREKELRSIRGDGSGVRKLSDRIYDFATYNDLGNPDKSTGLARPILGGSEKYPYPRRCRTGRLPTDTDMNAESRVEKPLPMYVPRDERFEESKQNTFAVKKLKAVLHNLIPGLKASLSAKSKDFNEFSDIEGLYSEGLLIKLGFQDEVLNKIPLIRKIHESSQGLLKYDTPKIISKDKFAWLRDDEFARQAIAGINPVNIEKLEVFPPVSQLDPQRFVVRTKSVEYMPFLLSLCMFLNGGIRLLYAILENDWILGLVVYAMYRSPKSSNKFNQDEEQHDDPLISSS 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0216 552 SMART LH2_4 97 252 IPR001024 GO:0005515
Lele40g0216 552 SUPERFAMILY Lipoxigenase 256 483 IPR036226 -
Lele40g0216 552 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 97 255 IPR036392 GO:0005515
Lele40g0216 552 ProSiteProfiles PLAT domain profile. 128 251 IPR001024 GO:0005515
Lele40g0216 552 PANTHER LIPOXYGENASE 99 483 IPR000907 GO:0016702|GO:0034440|GO:0046872
Lele40g0216 552 Gene3D - 378 463 IPR027433 -
Lele40g0216 552 Gene3D - 274 376 - -
Lele40g0216 552 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 254 552 IPR013819 GO:0016702|GO:0046872
Lele40g0216 552 Gene3D PLAT/LH2 domain 100 273 - -
Lele40g0216 552 Pfam Lipoxygenase 264 485 IPR013819 GO:0016702|GO:0046872
Lele40g0216 552 Gene3D - 472 528 - -
Lele40g0216 552 Pfam Sugar efflux transporter for intercellular exchange 482 520 IPR004316 GO:0016020
Lele40g0216 552 Pfam PLAT/LH2 domain 173 250 IPR001024 GO:0005515
Lele40g0216 552 FunFam Lipoxygenase 256 358 - -
Lele40g0216 552 PRINTS Plant lipoxygenase signature 247 268 IPR001246 GO:0016491
Lele40g0216 552 PRINTS Plant lipoxygenase signature 221 239 IPR001246 GO:0016491
Lele40g0216 552 PRINTS Plant lipoxygenase signature 286 302 IPR001246 GO:0016491
Lele40g0216 552 PRINTS Plant lipoxygenase signature 432 448 IPR001246 GO:0016491
Lele40g0216 552 PRINTS Plant lipoxygenase signature 319 338 IPR001246 GO:0016491
Lele40g0216 552 PRINTS Plant lipoxygenase signature 471 490 IPR001246 GO:0016491
Lele40g0216 552 PRINTS Plant lipoxygenase signature 387 408 IPR001246 GO:0016491
Lele40g0216 552 CDD PLAT_LH2 97 252 IPR042057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0216 Lele-ChrLele40 1675089 1682309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0216 1 483 Acyl Lipid Metabolism Gene Families AT1G17420 64.008 0.0 596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0216 40 1675089 1682309 Lele40g0216 40 1675089 1682309 ECH
Lele37g0226 37 1756884 1761776 Lele40g0216 40 1675089 1682309 hybridization
Lele38g0228 38 1790346 1795725 Lele40g0216 40 1675089 1682309 hybridization