Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0632 ATGTCTGCTCTCAGCTTCATACTTCTTTGTTCAGGTTTGGATCAAGTATCAACAGAAGATGATTTAGAGATGAGAGTTCTTGCTCCTGATCTTATCAGGATAATGGAAAACTCTATACTCACATTCAAACTTTTCCTGAAACGGGACAAGAAAAAGCTGAGCGGACCGATTAACCTTGTTGGAAATCAGAACCAGCTTACAGCTCATTTACAACAAGTTCATTCTAGTCTTGAGAAGAAAGCAATGAAATTCAAGGAATTGAGGAGAAAGAGAAAAGGCTGGAAGAAGAGGTCTTGGCCCCAGAAGCAAGAGGAGATTCAGCTATTAATGGCTCTCATTGACATCAAAATCCTATCAAGGGTTATGAGAATGACAAGGATAACAAAAGAACAACTATTTTGAGGTCTTCAATTGGCTGCCTCCAATTTTCATGAGGGTCTTCAATTGACTCTATCATCTGGAAATAGGATGGCTACTGAGAGTCTCATGAGAATGGCGGAAGGAAGCCAAACTAGTAAATGGCTTTCCTCAAAGGATATCTCAGCATTTGGATCTTTCTGGAAAAATAAGACAACAGAGGAGCTGGATAGTTTCTTGAAGGGACAAAAGTTCAGTCAAGGACAAGAAAACTTTATTCCTAGTCGAAGTGGTAGTGCTCCACCAAGCATGGAGGGCTCAGTTGCAGCAGTTGGAAATATGTTACCTGTGAAGGATTCTAGTCTGATTTCAAATTCAGGAAGTTCGAGCAACGCTCTTGAGGGTCACAAGTCTGAAGGAGAGCTATTTGATCCTTCTAATGTTGCATGTCGTTCCTTGGAGCTCAACTTGGATCCCAAGCTTCTTTCACAGCACTTGCAAAATCAAGGCATTGCTGCTTCAGATAATGGTGGCATGGTTTACCCTTCCACTGATGAAGCTTCGAACAAAAATGGTTCACCAAAGCAAGCTTTAGAAGGCTTGTTCAATCCCAATAACATGCCTAAGCCTGGGAAAAATGCAGTCCCATTAGCTAGCGTTCACAAAAGCTTGGTGGATTTGATACAGGAAGACTTCCCCCGTACCCCCTCCCCTGTATTCAACCAATCTCATTTATCAAGTCACTCTACAACTGAAGATTCAGTTGATGTTGATATGCAAGCAATTTCTTCAAGCGTTTCATCAATAGATTTATCAAACAAGTCAGATTCAGCTACATTTTCTACTAGTGTTGTGGAGACAGGCATCCTGAACACAGATGCTTGTGAGCTAACATCAAATGAGGTTTCTCTGTTAAACTTCCAAAGTTTGCAGCATGCTGATGAAACCCAAGACCTGCCAGTGGATCCAAGTCCAACATTCAACAAAGATGCTGCGCTGAAGGATTATGTATCTACAGATGGGGCTGTAAATGTGGAGGAGCAAAATTTGACAGCCTCTGATGTTAGAAGAAAAAACCTAGAGCAACAACGATCTCATGGTAGGAATAAGCTAAATCAATCTTTTGCTTGTGGCTATGCTCATCAATTTCCAGTTGTTGGGTCACAATTTCCTCAAGGCATAAACAATTCACAAGGTTACCTGGGAATGCTTGCTTATAGTAATTCACAATTTTCACCTCTTGGTATACAGTCATCATTGCCTTCTACTGGACTTACTGGTCCTTATCATGCAACTCCAACTGCATTCATGGCTTCAAGAAACCCATTTTATCCGAATTTCCAGCCATCCGGTTTTCTCCCTCAACAGTATAGTTTAGGTGGGTATGATTTAGGTTCTACCTATGCTGCACCACATATAGCTGGATATTCTTCTCAAGGCGACCTTCCTCTTCCATTTGAAGCTGCAGGCAGTTCAGACCTGAATGGTCAGGCTACCAATGTTTCACCAGGCAGTGTTCCACATGCTTCTGATTTTCAAAGTCGCAGCAAGATTCATGGGCAATATGGATTACCAGTACAACCTTCATATGTTAATCCAATTAATATGCAGTATTATTCCCATGCTTCCACTGATGTGTATCCTGCTGCTTTTCAGCAGAATCAATTGTCATCGAGAACACTGACTGGAGGACTGGCTTGTTCTCTACCTCCCCAGCAAGATGCATCTGTTCCTCCCTATTTAAATGGTCATAAATTTCAATCTTCAGCACATGGTAGCTTGCCCATTCCAAGTACAAAATATATGGGGATCTCTGGAAGTAGCTATTATGGGAACTCCAATACGGGTGTCATGATGCAATTTCCTCCTTTGTCTCATGGTGGTCCAATTTCTCCATCCTCATCAATTGGCAAAACTAACACACAAGGTGGACAGAATGAGAATATGTCTTCTGTTTCTGTTAGAAATGCAGGATTTTCTCCTGGACACAGAGGAATTAGGGGTTTGGGTGAAATCAGGCAACAGTCTTTTCTAGAGGAACTTAAATCCGTCAATCCTGAGAAATTCAAGATTTCTGATATAGCAGGGCGGATTGTTGAATTCAGTATTGACCAACATGGAAGTCGATTTATCCAGCTGAAGCTCGAAAACTGCAGTGCTGAAGAGAAGACATCTGTTTTTGAAGAAATCCTTCCATATTCCTCAAAATTAATGACGGATGTGTTTGGCAATTATGTAATTCAGAAGTTTTTTGAGCATGGAACTGCTGATCAGCGAAAAAACCTTGCAGATAAACTTTCTGGACAGATTTTACCATTAAGTATGCAGATGTATGGCTGTCGTATTATCCAGAAGGCCCTTGAGGTTATTGAATTAGATCAGAAGATACTGTTAGTGCAAGAGCTCGATGGACATGTCATGAGATGTGTGCACGATCAAAATGGAAATCATGTCATACAAAAATGTATTGAATGCATTCCTGTGGACAAAATCCAGTTTATCATATCTGCATTTCAAGGACAAGTTCCGGCTCTTTCTACTCACCCATATGGGTGTCGTGTTATTCAGAGAATCTTGGAGCATTATTCAGATGAGCAATATATTCAATTTATAGTGGACGAGATTCTGGAATCTGCTTCTGTCCTTGCTCAAAATCAGTACGGCAATTATGTGACTCAGCATGTGCTTAAAAGGGGAAAGAATGAAAGAGGTCAAATTGTAAGCAAATTAGCTGGCAAGGTTGTACAACTGAGTCAACATAAGTATGCTTCTAATGTTGTTGAGAAGTGTTTAGAGCATGGTGATGCAACTGAACGAGAGGCCATGATTGCAGAAATAATTGGGCAGCCTGGTGAAGACCATAATTTATTGACGATGATGAAGGACCAGTATGCAAATTATGTGATCCAGAAACTTCTTGATATAAGCAATGACAGGAATAGGGAAATACTTCTCAATCATATAAGAGATCATATAGATGCTTTGAAGAAATACACTTATGGGAAACACATTGTTGCTCGTTATGAACAACTTGTTGGTCCAGGATATGCATACCTCACTATTTGTGTAACATATTCTGACATTGTGTTATTGGTCTTGAAATGCTCCAAAAATGACTATAGAGCTTATATGAATCTTGATAACATGAATAAGGCTGAAGATTGA 3522 0.4032 MSALSFILLCSGLDQVSTEDDLEMRVLAPDLIRIMENSILTFKLFLKRDKKKLSGPINLVGNQNQLTAHLQQVHSSLEKKAMKFKELRRKRKGWKKRSWPQKQEEIQLLMALIDIKILSRVMRMTRITKEQLFXGLQLAASNFHEGLQLTLSSGNRMATESLMRMAEGSQTSKWLSSKDISAFGSFWKNKTTEELDSFLKGQKFSQGQENFIPSRSGSAPPSMEGSVAAVGNMLPVKDSSLISNSGSSSNALEGHKSEGELFDPSNVACRSLELNLDPKLLSQHLQNQGIAASDNGGMVYPSTDEASNKNGSPKQALEGLFNPNNMPKPGKNAVPLASVHKSLVDLIQEDFPRTPSPVFNQSHLSSHSTTEDSVDVDMQAISSSVSSIDLSNKSDSATFSTSVVETGILNTDACELTSNEVSLLNFQSLQHADETQDLPVDPSPTFNKDAALKDYVSTDGAVNVEEQNLTASDVRRKNLEQQRSHGRNKLNQSFACGYAHQFPVVGSQFPQGINNSQGYLGMLAYSNSQFSPLGIQSSLPSTGLTGPYHATPTAFMASRNPFYPNFQPSGFLPQQYSLGGYDLGSTYAAPHIAGYSSQGDLPLPFEAAGSSDLNGQATNVSPGSVPHASDFQSRSKIHGQYGLPVQPSYVNPINMQYYSHASTDVYPAAFQQNQLSSRTLTGGLACSLPPQQDASVPPYLNGHKFQSSAHGSLPIPSTKYMGISGSSYYGNSNTGVMMQFPPLSHGGPISPSSSIGKTNTQGGQNENMSSVSVRNAGFSPGHRGIRGLGEIRQQSFLEELKSVNPEKFKISDIAGRIVEFSIDQHGSRFIQLKLENCSAEEKTSVFEEILPYSSKLMTDVFGNYVIQKFFEHGTADQRKNLADKLSGQILPLSMQMYGCRIIQKALEVIELDQKILLVQELDGHVMRCVHDQNGNHVIQKCIECIPVDKIQFIISAFQGQVPALSTHPYGCRVIQRILEHYSDEQYIQFIVDEILESASVLAQNQYGNYVTQHVLKRGKNERGQIVSKLAGKVVQLSQHKYASNVVEKCLEHGDATEREAMIAEIIGQPGEDHNLLTMMKDQYANYVIQKLLDISNDRNREILLNHIRDHIDALKKYTYGKHIVARYEQLVGPGYAYLTICVTYSDIVLLVLKCSKNDYRAYMNLDNMNKAED 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0632 1173 MobiDBLite consensus disorder prediction 740 776 - -
Lele37g0632 1173 ProSiteProfiles Pumilio RNA-binding repeat profile. 812 847 IPR001313 GO:0003723
Lele37g0632 1173 MobiDBLite consensus disorder prediction 292 334 - -
Lele37g0632 1173 MobiDBLite consensus disorder prediction 746 776 - -
Lele37g0632 1173 MobiDBLite consensus disorder prediction 611 630 - -
Lele37g0632 1173 CDD Pumilio 807 1126 IPR033712 GO:0003723
Lele37g0632 1173 MobiDBLite consensus disorder prediction 606 630 - -
Lele37g0632 1173 MobiDBLite consensus disorder prediction 300 319 - -
Lele37g0632 1173 FunFam Pumilio homolog 1 isoform 2 791 1135 - -
Lele37g0632 1173 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 597 1129 - -
Lele37g0632 1173 ProSiteProfiles Pumilio RNA-binding repeat profile. 920 955 IPR001313 GO:0003723
Lele37g0632 1173 MobiDBLite consensus disorder prediction 240 260 - -
Lele37g0632 1173 ProSiteProfiles Pumilio RNA-binding repeat profile. 956 992 IPR001313 GO:0003723
Lele37g0632 1173 MobiDBLite consensus disorder prediction 354 373 - -
Lele37g0632 1173 Pfam Pumilio-family RNA binding repeat 1074 1107 IPR001313 GO:0003723
Lele37g0632 1173 Pfam Pumilio-family RNA binding repeat 888 921 IPR001313 GO:0003723
Lele37g0632 1173 Pfam Pumilio-family RNA binding repeat 855 885 IPR001313 GO:0003723
Lele37g0632 1173 Pfam Pumilio-family RNA binding repeat 960 995 IPR001313 GO:0003723
Lele37g0632 1173 Pfam Pumilio-family RNA binding repeat 1001 1027 IPR001313 GO:0003723
Lele37g0632 1173 Pfam Pumilio-family RNA binding repeat 1032 1066 IPR001313 GO:0003723
Lele37g0632 1173 Pfam Pumilio-family RNA binding repeat 931 955 IPR001313 GO:0003723
Lele37g0632 1173 Pfam Pumilio-family RNA binding repeat 816 850 IPR001313 GO:0003723
Lele37g0632 1173 MobiDBLite consensus disorder prediction 240 254 - -
Lele37g0632 1173 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 792 1131 IPR033133 GO:0003723
Lele37g0632 1173 ProSiteProfiles Pumilio RNA-binding repeat profile. 884 919 IPR001313 GO:0003723
Lele37g0632 1173 ProSiteProfiles Pumilio RNA-binding repeat profile. 1028 1063 IPR001313 GO:0003723
Lele37g0632 1173 Pfam Protein of unknown function (DUF1666) 15 132 IPR012870 -
Lele37g0632 1173 ProSiteProfiles Pumilio RNA-binding repeat profile. 1064 1105 IPR001313 GO:0003723
Lele37g0632 1173 ProSiteProfiles Pumilio RNA-binding repeat profile. 848 883 IPR001313 GO:0003723
Lele37g0632 1173 SMART pum_5 812 847 IPR001313 GO:0003723
Lele37g0632 1173 SMART pum_5 1028 1063 IPR001313 GO:0003723
Lele37g0632 1173 SMART pum_5 848 883 IPR001313 GO:0003723
Lele37g0632 1173 SMART pum_5 884 919 IPR001313 GO:0003723
Lele37g0632 1173 SMART pum_5 956 992 IPR001313 GO:0003723
Lele37g0632 1173 SMART pum_5 993 1027 IPR001313 GO:0003723
Lele37g0632 1173 SMART pum_5 920 955 IPR001313 GO:0003723
Lele37g0632 1173 SMART pum_5 1070 1105 IPR001313 GO:0003723
Lele37g0632 1173 SUPERFAMILY ARM repeat 795 1127 IPR016024 -
Lele37g0632 1173 Gene3D - 791 1132 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0632 Lele-ChrLele37 5291094 5303454 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0632 37 5291094 5303454 Lele37g0632 37 5291094 5303454 ECH
Lele37g0632 37 5291094 5303454 Lele39g0793 39 16987573 16990583 hybridization
Lele37g0632 37 5291094 5303454 Lele40g0567 40 4838571 4841171 hybridization