Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0467 ATGGCGTCCGGGTCGGCTTCTCTAATGTGGTTCCGAAAGGGATCCATAACAACCGGGCCCTGGATTTCACCCGCCAAGGGTCTCAACCGAATTAAGTTCCTGCTTGAAAGCCTTGTGGACCTTGATTTGAACCGTAAGAAGCTCGGATCACGACTGCTCATGCTCAAGGGTGAACCAGGAAAGTGGAACATCAGAAAGCTTTGCTTTGAGTATGACACTGATCCATATTATCAGGCTTTAGATACTAAAGTTAAGAACTATGCAGTGGTCGCTGGTATTGAGGTTTTCTCTCCTGTGAGTCACACGCTCTTCAATCCAGCGGATATTATACAGAAGAATGGAGGGAAGCCACCCCTTACTTATCAATCGTTTGTGAAGATTGCTGGACAACCATCATGCCCTCTCTCAACTACGGTTTCCTCACTTCCTCCGGTTGGAAATCTTGAAAGTTGTGAGATTTCTGAAGTTCCAACAATCGAAGAACTTGGATACGAAAATGTTAAACAGGAAGAATTCTCTCCTTTCAAAGGTGGTGAATCAGAAGCGTTGAAGAGGCTGACAGAATGCATGAAGAAAAAGGAGTTCGTGGCCAACTTTGAGAAGCCCAAGGGTAATCCATCTGCTTTTGTTAGACCAGAAACAACTGTTCTATCACCTTATTTGAAATTTGGTTGTTTATCCTCCAGATATTTCTACCAACAGATTCAAGATGTGTATAAAACTATGCCAAAGCATACATCAGCACCTGTTTCTCTTCTAGGACAGGATGACAACAAACTTCATGAAGCTCCGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCCATCATGGTTCAGCTACGTCAATGGGGTTGGATGCACCATCTGGCGCGACATTCTGTGGCATGTTTTCTTTCTCGTGGTGACCTGTTTGTTCATCGTGAAAAAGGGCGTGATGTCTTTGAGAGGCTTCTTATTGATTCAGATTGGGCAATTAATAATGGAAACTGGCTTTGGCTCTCATATATGCCTAAGGAATACATTTATGAACCAGGGACTGCTCCTCTAAGCGTTCAGAAGAAAGCAAATTGCATTATAGGCAAAGACTACCCAATGCCAGTTGTGTCTCATGATTCTGCTATCAAAGAGTGCCGAAGAAGAATGGCTGAGGCATACGCGTTGAACAAGGAATTGAATGATTCAGTAAGCGAAGAAGATCTGAAAAACTCAAGGAGGAAACTTGATGAGGCAACAGAAGAGAAAGAGACTAAACATAAAAGATATAGACAGAAGCTGATTGGTTGA 1287 0.4336 MASGSASLMWFRKGSITTGPWISPAKGLNRIKFLLESLVDLDLNRKKLGSRLLMLKGEPGKWNIRKLCFEYDTDPYYQALDTKVKNYAVVAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFVKIAGQPSCPLSTTVSSLPPVGNLESCEISEVPTIEELGYENVKQEEFSPFKGGESEALKRLTECMKKKEFVANFEKPKGNPSAFVRPETTVLSPYLKFGCLSSRYFYQQIQDVYKTMPKHTSAPVSLLGQDDNKLHEAPREARTGFPWIDAIMVQLRQWGWMHHLARHSVACFLSRGDLFVHREKGRDVFERLLIDSDWAINNGNWLWLSYMPKEYIYEPGTAPLSVQKKANCIIGKDYPMPVVSHDSAIKECRRRMAEAYALNKELNDSVSEEDLKNSRRKLDEATEEKETKHKRYRQKLIG 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0467 428 Pfam FAD binding domain of DNA photolyase 335 383 IPR005101 -
Lele37g0467 428 Pfam FAD binding domain of DNA photolyase 228 336 IPR005101 -
Lele37g0467 428 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 164 389 IPR036134 -
Lele37g0467 428 Gene3D HUPs 26 177 IPR014729 -
Lele37g0467 428 Gene3D - 101 252 - -
Lele37g0467 428 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 1 103 IPR006050 -
Lele37g0467 428 Coils Coil 401 425 - -
Lele37g0467 428 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 336 427 - -
Lele37g0467 428 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 20 149 IPR036155 -
Lele37g0467 428 Coils Coil 375 395 - -
Lele37g0467 428 PANTHER CRYPTOCHROME 335 389 IPR002081 -
Lele37g0467 428 Pfam DNA photolyase 26 128 IPR006050 -
Lele37g0467 428 MobiDBLite consensus disorder prediction 394 428 - -
Lele37g0467 428 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 253 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0467 Lele-ChrLele37 3877602 3881139 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0467 37 3877602 3881139 Lele37g0467 37 3877602 3881139 ECH
Lele37g0467 37 3877602 3881139 Lele39g0957 39 18407674 18412773 hybridization
Lele37g0467 37 3877602 3881139 Lele40g0409 40 3376116 3386125 hybridization