Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0351 ATGAGTAACTCTGGGGGAGTGATGGCTTTATCGCAACCTTCCCAGTCGGCGGCTAAGCAGTTTGGTGTGACGAAGCCGATATCAGTGGCTGGGCCGAAGGCGGCTGATTTACAAAGGACTTTGGAGTTAGAGAAGTTTCTGGTTCATTCAGGGCTATATGAGAGCGAAGAGGAGGCTGCTAAGAGAGAGGAGGTCCTTGTTCGACTTGGACAGATAGTAAAGGATTGGGTGAAGCAACTGACGCGGCTAAGAGGATACACTGATCAAATGGTGGAAGATGCAAATGCTGTCATATTCACATTTGGTTCTTATCGACTTGGGGTTCATGGTCCTGGGGCAGACATAGACACACTATGTATTGGGCCATCCTATGTGAACCGAGAGGAGGACTTTTTCTTTGTATTGCATGACATTCTGGCTAACATGGATGAGGTGTCTGAACTGCAACCGGTTCCAGATGCTCATGTACCAGTTATGAAATTCAAATTTGATGGAATATCAATTGACCTACTTTATGCCAGTATATCTTGCTTGGTTGTGCCGGAAAACTTGGACATATCTGACGTATCTGTCTTATACAATGTGGATGAGCCTACTGTTCGAAGTCTGAATGGATGTCGAGTTGCAGATCAAATTTTAAAGCTTGTTCCAAATGTTGAGCACTTTCGAACAACGCTACGGTGCTTAAAATTTTGGGCCAAAAGACGAGGTGTTTATTCCAATGTGACTGGATTTCTTGGTGGTGTGAACTGGGCCATTCTTGTTGCTCGAGTGTGCCAGCTCTATCCAAATGCAGTTCCAAGTATGCTTGTCTCTCGATTCTTTCGGGTGTATACTCAGTGGCGTTGGCCAAATCCTGTCATGTTATGTCCAATTGAGGAGAATGAGCTTGGATTTTCTGTTTGGGATCCTCGTAGAAATCCTCGTGACCGAACACATCATATGCCAATCATTACTCCTGCCTATCCCTGTATGAATTCTAGTTACAATGTTTCAACAAGCACACTCCGGGTTATGATGGAACAGTTTCATTATGGCAATAAGATATGTGAGGAAATAGATCTGAATAAAGCCCATTGGAGTCGTATGTTTGAGCCATACCTTTTCTTTGAAAGTTATAAAAACTATCTGCAAGTTGACATAGTAGCGGCTGATGCTGATGACTTGCGGACATGGAAGGGTTGGGTGGAATCTCGACTTCGGCAGCTGACTTTGATGATTGAGCGTGATACTCTTGGAAAGTTGCAGTGTCATCCTTATCCTTATGATTATGTGGATGCTTCTAAACAATGTGCACATTGTGCTTTCTTCATGGGCTTGCAGAGGAAGCAAGGGCAGATTGTTCAAGAAGGTCAACAGTTCGATATACGTGAGACAGTTGATGAATTTCGGCATTCTGTTAATATGTACGTGTTCTGGAAACCTGGGATGAAAATATATGTTTCTCATGTTCGTAGAAGGCAAATTCCATCTTATGTTTTACCTAATGGTTATGGTAAGAGATCTGGACCATCAAAGCCAACAGCACAGGTAGAGGAGCCTGTTAAATCATTTCACGAAGATGAGGTATATGGGGCCAAACACGCCGATGGAAACCGCAAGAGGAAAAATGAGGACATGGCGGGTGAGAAAGATGATGTCATTGCAAAAAGGCTTTCTATTAGTCCTCAGAAGCAAGATTCAATTTCTTCGGACATTTTGGATAAATCAGGGGATAGCTTGGGTAGCACTACAAGAAACGGAATGTGCCTGTTTGAAGTGAATCGATATCAATGTTTGGCTTCCAATGGTCAAGAGTTGAGACCTATGGCGAGCATTGAATTGTCCTTCAGAGGGCAAAATGATTTGGATACAGGAATGACATCTCCTGAACAAGAAGAAGCTGAATGTGCATCAAATTCTAGTGTCATTACATCTGCTACAAGTGATGGCGGTTCTTCAGAGGATGCTGGGAGTGAATCAGTGGCAAACTCTGCTGAGGATGACATGGGAGGAGTTGAAGGGACTGTCAGAGAGGGTGATGAGATGGCCTCTTTGCAGAACGCTGCATGTGGGACATACTCTGTTGCACTTTTGGAGAATGCAATTACGAGCGACAAAGGATTATTGCAAGATGAGCTTTGGAATAGTACGAGCTGTTGTACAATTTAG 2151 0.4361 MSNSGGVMALSQPSQSAAKQFGVTKPISVAGPKAADLQRTLELEKFLVHSGLYESEEEAAKREEVLVRLGQIVKDWVKQLTRLRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYVNREEDFFFVLHDILANMDEVSELQPVPDAHVPVMKFKFDGISIDLLYASISCLVVPENLDISDVSVLYNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFHYGNKICEEIDLNKAHWSRMFEPYLFFESYKNYLQVDIVAADADDLRTWKGWVESRLRQLTLMIERDTLGKLQCHPYPYDYVDASKQCAHCAFFMGLQRKQGQIVQEGQQFDIRETVDEFRHSVNMYVFWKPGMKIYVSHVRRRQIPSYVLPNGYGKRSGPSKPTAQVEEPVKSFHEDEVYGAKHADGNRKRKNEDMAGEKDDVIAKRLSISPQKQDSISSDILDKSGDSLGSTTRNGMCLFEVNRYQCLASNGQELRPMASIELSFRGQNDLDTGMTSPEQEEAECASNSSVITSATSDGGSSEDAGSESVANSAEDDMGGVEGTVREGDEMASLQNAACGTYSVALLENAITSDKGLLQDELWNSTSCCTI 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0351 716 CDD NT_PAP_TUTase 61 216 - -
Lele37g0351 716 Gene3D Beta Polymerase, domain 2 54 210 IPR043519 -
Lele37g0351 716 FunFam Putative poly(A) polymerase gamma 196 364 - -
Lele37g0351 716 FunFam Poly(A) polymerase alpha, putative 54 210 - -
Lele37g0351 716 Gene3D - 22 364 - -
Lele37g0351 716 Pfam Nucleotidyltransferase domain 92 171 IPR002934 GO:0016779
Lele37g0351 716 Gene3D Poly(A) polymerase predicted RNA binding domain 369 484 - -
Lele37g0351 716 SUPERFAMILY PAP/OAS1 substrate-binding domain 217 366 - -
Lele37g0351 716 FunFam Nuclear poly(A) polymerase 4 368 484 - -
Lele37g0351 716 Pfam Poly(A) polymerase central domain 22 366 IPR007012 GO:0004652|GO:0043631
Lele37g0351 716 MobiDBLite consensus disorder prediction 614 668 - -
Lele37g0351 716 Pfam Poly(A) polymerase predicted RNA binding domain 369 425 IPR007010 GO:0003723|GO:0043631
Lele37g0351 716 PANTHER POLY A POLYMERASE 13 539 - -
Lele37g0351 716 SUPERFAMILY Nucleotidyltransferase 21 215 IPR043519 -
Lele37g0351 716 MobiDBLite consensus disorder prediction 614 654 - -
Lele37g0351 716 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 369 494 IPR011068 GO:0003723|GO:0016779|GO:0031123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0351 Lele-ChrLele37 2917954 2922172 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0351 37 2917954 2922172 Lele37g0351 37 2917954 2922172 ECH
Lele37g0351 37 2917954 2922172 Lele39g1075 39 19361301 19365118 hybridization
Lele37g0351 37 2917954 2922172 Lele40g0314 40 2529799 2534273 hybridization