Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0314 ATGGCTTTGTCGCAACCTTCCCAGTCGGCGGCTAAGCAATATGGTGTGACGAAGCCGATATCAATGGCCGGGCCCAAGGCGGCTGATTTACAACGGACTTTGGAGTTAGAGGAGTTCCTGGTTCATTCAGGGCTATATGAGAGCGAAGAGGAGGCCGCTAAGAGAGAGGAGGTCCTTGATCGACTTGGAAAGATAGTAAAGGATTGGGTGAAGCAACTGACGCGGCTAAGAGGATACACTGATCAAATGGTTGAAGATGCAAATGCTGTCATATTCACATTTGGTTCTTATCGACTTGGGGTTCATGGTCCTGGGGCAGACATAGACACATTATGTATTGGGCCATCCTATGTGAATCGAGAGGAGGACTTTTTCTTTGTATTGCATGACATTCTGGCTAACATAGATGAGGTGTCTGAACTGCAACCCGTTCCAGATGCTCATGTACCAGTTATGAAATTCAAATTTGATGGAATATCAATTGACCTACTTTATGCTAGTATATCCTGCTTGGTTGTGCCAGAAAACTTGGACATATCTGATGTATCTGTCTTATGCAATGTGGATGAGCCTACTGTTCGAAGTCTGAATGGATGTAGAGTTGCAGACCAAATTTTAAAGCTTGTTCCAAATTTTGAGCACTTTCGAACAACGCTTTGTTGCTTAAAATTTTGGGCCAAAAGACGAGGTGTTTATTCCAATGTGACTGGATTTCTTGGTGGTGTGAACTGGGCCATTCTTGTTGCTCGAGTGTGCCAGCTCTATCCAAATGCAGTTCCAAGTATGCTTGTCTCCCGATTCTTTCGGGTGTATACTCAGTGGCGTTGGCCAAATCCTGTCATGTTATGTCCAATTGAGGAGAATGAGCTTGGATTTTCTATTTGGGATCCTCGTAAAAATCCTCGTGACCGAACACATCATATGCCCATCATTACTCCTGCCTATCCCTGTATGAATTCTAGTTACAATGTTTCAACAAGTACACTTCGTGTTATGATGGAACAGTTTCATTATGGCAATAAGATATGTGAGGAAATAGATCTAAATAAAGCTCATTGGAGTCGTATGTTTGAGCCATACCTTTTCTTTGAAAGTTATAAAAACTATCTGCAAGTTGACATAGTAGCGGCTGATGCTGATGACTTGCGGGCATGGAAGGGTTGGGTGGAATCTCGACTTCGGCAGCTGACTTTGATGATTGAGCGTGACACTCTTGGAAAGCTTCAGTGCCATCCTTATCCTCATGATTATGTGGATGCTTCTAAACAACGTGCACATTGTGCTTTCTTCATGGGCTTGCAGAGGAAGCAAGGGGAGATTGCTCAAGAAGGTCAACAATTTGACATACGTGAGACAGTTGATGAATTTAGGCATTCTGTTAATATGTACATGTTCTGGAGACCTGGGATGAAAATATATGTTTCTCATGTTCTTAGAAGGCAAATTCCATCTTACGTTTTACCTAACGGTTATAATAACAGATCTCGACAATCAAAGCCAACAGCACAAGTAGAGGAACCTGTTAAATCATTTAATGCAGGTGAGGTGTATGGGACTGAACATATTGATGGAAACCGGAAGAGGAAAAATGTGTACATGGTGGGTGAGAAGCATGATGTTATTGCAAAAAGGCTTTCTATTAGTCCTCAGAGTCAAGATTCAGTTTCTTCAGGAATTTTGGATAAATCAGTGGATAGCTTGGGTATCAGTACAAGAAACGGAATGTGCCGGTTTGAAGTGAATCAATATCAATGTCTGGCTTCTGATGGTCAAGAGTTGAGACCTATGGCTAGCATTGAATTGTCCTACAGAGGGCAAAATGATTTGGATGAAGGAATGGAATATCCGGAACAAGAACCTGAATGTGCATCAAATTCTAGTGTCATTACATCTGCTACAAGTGATGGTGGTTCTTCAGAGGATGCTGGGATTGAATCAGTGGCGAACTCTGCTGAGGTCGACATGAGAGGAGTTGAGGGGACTGTCAGAGAGGGAGATGAGTTGGCTAGTGAAAAAGGATTATTGCAAGATGAGCTTTGGTGTAGTATGAGTAGGAAAGAGATAAGGAGATTCAGTTTAACATAA 2085 0.4235 MALSQPSQSAAKQYGVTKPISMAGPKAADLQRTLELEEFLVHSGLYESEEEAAKREEVLDRLGKIVKDWVKQLTRLRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYVNREEDFFFVLHDILANIDEVSELQPVPDAHVPVMKFKFDGISIDLLYASISCLVVPENLDISDVSVLCNVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLCCLKFWAKRRGVYSNVTGFLGGVNWAILVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSIWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFHYGNKICEEIDLNKAHWSRMFEPYLFFESYKNYLQVDIVAADADDLRAWKGWVESRLRQLTLMIERDTLGKLQCHPYPHDYVDASKQRAHCAFFMGLQRKQGEIAQEGQQFDIRETVDEFRHSVNMYMFWRPGMKIYVSHVLRRQIPSYVLPNGYNNRSRQSKPTAQVEEPVKSFNAGEVYGTEHIDGNRKRKNVYMVGEKHDVIAKRLSISPQSQDSVSSGILDKSVDSLGISTRNGMCRFEVNQYQCLASDGQELRPMASIELSYRGQNDLDEGMEYPEQEPECASNSSVITSATSDGGSSEDAGIESVANSAEVDMRGVEGTVREGDELASEKGLLQDELWCSMSRKEIRRFSLT 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0314 694 Pfam Nucleotidyltransferase domain 85 164 IPR002934 GO:0016779
Lele40g0314 694 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0004652|GO:0043631
Lele40g0314 694 Pfam Poly(A) polymerase predicted RNA binding domain 362 420 IPR007010 GO:0003723|GO:0043631
Lele40g0314 694 CDD NT_PAP_TUTase 54 209 - -
Lele40g0314 694 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Lele40g0314 694 MobiDBLite consensus disorder prediction 620 645 - -
Lele40g0314 694 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 487 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lele40g0314 694 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 359 - -
Lele40g0314 694 FunFam Putative poly(A) polymerase gamma 187 357 - -
Lele40g0314 694 PANTHER POLY A POLYMERASE 7 507 - -
Lele40g0314 694 SUPERFAMILY Nucleotidyltransferase 12 208 IPR043519 -
Lele40g0314 694 MobiDBLite consensus disorder prediction 616 669 - -
Lele40g0314 694 Gene3D Poly(A) polymerase predicted RNA binding domain 362 477 - -
Lele40g0314 694 FunFam Nuclear poly(A) polymerase 4 361 477 - -
Lele40g0314 694 FunFam Poly(A) polymerase alpha, putative 47 203 - -
Lele40g0314 694 Gene3D - 15 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0314 Lele-ChrLele40 2529799 2534273 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0314 40 2529799 2534273 Lele40g0314 40 2529799 2534273 ECH
Lele37g0351 37 2917954 2922172 Lele40g0314 40 2529799 2534273 hybridization
Lele38g0334 38 2650393 2656644 Lele40g0314 40 2529799 2534273 hybridization