Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1075 ATGAGTAACTCTGGGGGAGTGGTGGCTTTATCGCAACCTTCCCAGTCGGCGGCTAAGCAATTTGGTGTGACGAAGCCGATATCAGTGGCTGGGCCGAGGGCGGCTGATTTACAAAGGACTTTGGAGTTAGAGAAGTTTCTGGTTCATTCAGGGCTATATGAGAGCGAGGAGGAGGCTGCTAAGAGAGAGGAGGTCCTTGTTCGACTTGGACAGATAGTAAAGGATTGGGTGAAGCAATTGACGCTGCTAAGAGGATACACTGATCAGATGGTGGAAGATGCAAATGCTGTCATATTCACATTTGGTTCTTATCGACTTGGGGTTCATGGTCCTGGGGCAGACATAGACACACTATGTATTGGGCCATCCTATGTGAACCGAGAGGAGGACTTTTTCTTTGTATTGCATGACATTCTGGCTAACATGGATGAGGTGTCTGAACTGCATCCGGTTCCAGATGCTCATGTACCAGTTATGAAATTCAAATTTGATGGAATATCAGTTGACCTACTTTATGCCAGTATATCTTGCTTGGTTGTGCCGGAAAACTTGGACATATCTGACGTATCTGTCTTATACAACGTGGATGAGCCTACTGTTCGAAGTCTGAATGGATGTCGAGTCGCAGATCAAATTTTAAAGCTTGTTCCAAATGTTGAGCACTTTCGAACAACGCTACGGTGCCTAAAATTTTGGGCCAAAAGACGAGGTGTTTATTCCAATGTGACTGGATTTCTTGGTGGTGTGAACTGGGCCATTCTTGTTGCTCGAGTGTGCCAGCTCTATCCAAATGCAGTTCCAAGTATGCTTGTCTCTCGATTCTTTCGGGTTTATACTCAGTGGCGTTGGCCAAATCCTGTCATGTTATGTCCAATTGAGGAGAATGAGCTTGGATTTTCTGTTTGGGATCCTCGTAAAAATCCTCGTGACCGAACACATCATATGCCCATCATTACTCCTGCCTATCCCTGTATGAATTCTAGTTACAATGTTTCAACAAGCACACTCCGGGTTATGATGGAACAGTTTCATTATGGCAATAAGATATGTGAGGAAATAGATCTGAATAAAGCCCAATGGAGTCGTATGTTTGAGCCATACCTTTTCTTTGGAAGTTGTAAAAACTATCTGCAAGTTGACATAGTCGCGGCTGACGCTGATGACTTGCGGACATGGAAGGGTTGGGTGGAATCTCGACTTCGGCAGCTGACTTTGATGATTGAGCGTGATACTCTTGGAAAGTTGCAGTGTCATCCTTATCCTTATGAGTATGTGGATGCTTCTAAACAATGTGCACATTGTGCTTTCTTCATGGGCTTGCAGAGGAAGCAAGGGGAGATTGTTCAAGAATGTCAACAGTTTGATATACGTGAGACAGTTGATGAATTTCGGCATTCTGTTAATATGTACGTGTTCTGGAAACCGGGGATGAACATATATGTTTCTCATGTTCGTAGAAGGCAAATTCCATCTTATGTTTTACCTAATGGTTATGGTAAGAGATCTGGACCATCAAAGCCAACAGTACAGGTAGAGGAACCTGTTAAATCATTTCCTGTAGATGAGGTCTATGGGACTGAACACGCTGATGGAAACCGCAAGAGGAAAAATGAGGACATGGTGGGTGAGAAGCATGATGTCATTGCAAAAAGGCTTTCTATTAGTCCTCGGAAGCAAGATTCAATTTCTTCGGACATTTTGGATAAATCAGGTGATAGCTTGGGTAGCACTACAAGAAACGGAATGTGCCTGTTTGAAGTGAATCAATATCAATGTTTGGCTTCCAATGGTCAAGAGTTGAGACCTATGGCGAGCATTGAATTGTCCTTCAGAGGGCAAAATGGTTTGGATAAAGGAATGACATCTCCTGAACAAGAAGCTGAATGTGCATCAAATTCTAGTGTCATTACATCTGCTACAAGTGATGGTGGTTCTTCAGAGGATGCTGGGAGTGAATCAGTGGCAAACTCTGCTGAGGATGATATGGGAGGAGTTGAGGGGACTGTCAGAGAGGGTGATGAGATGGCCTCTTTGCAGAACGCTGCATGTGGGACATACTCTGTTGCACTTTTGGAGAATGCAATTACTAGCAACAAATGA 2100 0.4386 MSNSGGVVALSQPSQSAAKQFGVTKPISVAGPRAADLQRTLELEKFLVHSGLYESEEEAAKREEVLVRLGQIVKDWVKQLTLLRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYVNREEDFFFVLHDILANMDEVSELHPVPDAHVPVMKFKFDGISVDLLYASISCLVVPENLDISDVSVLYNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFHYGNKICEEIDLNKAQWSRMFEPYLFFGSCKNYLQVDIVAADADDLRTWKGWVESRLRQLTLMIERDTLGKLQCHPYPYEYVDASKQCAHCAFFMGLQRKQGEIVQECQQFDIRETVDEFRHSVNMYVFWKPGMNIYVSHVRRRQIPSYVLPNGYGKRSGPSKPTVQVEEPVKSFPVDEVYGTEHADGNRKRKNEDMVGEKHDVIAKRLSISPRKQDSISSDILDKSGDSLGSTTRNGMCLFEVNQYQCLASNGQELRPMASIELSFRGQNGLDKGMTSPEQEAECASNSSVITSATSDGGSSEDAGSESVANSAEDDMGGVEGTVREGDEMASLQNAACGTYSVALLENAITSNK 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1075 699 MobiDBLite consensus disorder prediction 553 573 - -
Lele39g1075 699 MobiDBLite consensus disorder prediction 615 673 - -
Lele39g1075 699 FunFam Nuclear poly(A) polymerase 4 368 484 - -
Lele39g1075 699 CDD NT_PAP_TUTase 61 216 - -
Lele39g1075 699 MobiDBLite consensus disorder prediction 556 573 - -
Lele39g1075 699 Gene3D Beta Polymerase, domain 2 54 210 IPR043519 -
Lele39g1075 699 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 369 494 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lele39g1075 699 Pfam Poly(A) polymerase central domain 22 366 IPR007012 GO:0004652|GO:0043631
Lele39g1075 699 PANTHER POLY A POLYMERASE 13 536 - -
Lele39g1075 699 Gene3D - 22 364 - -
Lele39g1075 699 FunFam Putative poly(A) polymerase gamma 196 364 - -
Lele39g1075 699 FunFam Poly(A) polymerase alpha, putative 54 210 - -
Lele39g1075 699 Gene3D Poly(A) polymerase predicted RNA binding domain 369 484 - -
Lele39g1075 699 SUPERFAMILY PAP/OAS1 substrate-binding domain 217 366 - -
Lele39g1075 699 MobiDBLite consensus disorder prediction 615 653 - -
Lele39g1075 699 Pfam Nucleotidyltransferase domain 95 168 IPR002934 GO:0016779
Lele39g1075 699 Pfam Poly(A) polymerase predicted RNA binding domain 369 425 IPR007010 GO:0003723|GO:0043631
Lele39g1075 699 SUPERFAMILY Nucleotidyltransferase 21 215 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1075 Lele-ChrLele39 19361301 19365118 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1075 39 19361301 19365118 Lele39g1075 39 19361301 19365118 ECH
Lele37g0351 37 2917954 2922172 Lele39g1075 39 19361301 19365118 hybridization
Lele38g0334 38 2650393 2656644 Lele39g1075 39 19361301 19365118 hybridization