Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0174 ATGCGAGAGGATCAAGCCTGTCATAGTGTCATAGAAACAGAGTGTTACTTATTCTGCGTGGGATTTGATTTGCTTGGAGATGGGAGAGCCACAGATTTGGCTTTAGGAGACCAGGTTGATAATAATAGCAGTGAAAGTGTAAGAGCAAGAACAGCCAGTGGTCTGGACCAGAGGCACTTCATGGTATTGGATTTGGTGAAAATGGTCACAGAAATTTCAGAAAGGTCATGTGATCAGGCACGTGATGTTACTATAGCTCTTAACTTTTTTGGAAAAGGCCAAAGGGTGTGTTCATCTTTACTTTTCTTTTGGGCATGTCAATTTGCCGATATTGTTTGGTTCTGCTTACCTTCAGGGCCTAATGATCAGTCCAAGCAGTTAGATAGTGTTAGCAAACACCATGAGCCAGTGCCCCATGTTGTTGCTCGTCCATCACCTAATGATATACTTGAGTGGCATTATGTGTTGGAAGGAAGCGAAGGAACACCTTTTGCAGGTGGATATTATTATGGCAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCAAACGTAGCCCAAGTCAAATAGTTTTGCGGGTTACCATCTTCCAATTTAATGGTTGTGTGGGTTATGCTGATTTTGCAGTTCATCCAGAAAGCTGGAATCCTATGTGGTCCGTATCAAGCATACTTACCGGGCTTCTATCCTTCATGATGGATACCAGTCCAACGACTGGCAGTGTGAGCACTACTACTGAAGAGAAGCAACGTTTAGCAAAATCTTCCCTTTCTTTCAATTGCAAGAATGCAACATTCAGGAAAATGTTCCCTGAGTATGTTGATAAGTACAACCAACAGCGGCTTTCTGATCAAGCTGCCTCTGAACAAAGGGCAAGTTCAAGGCTCATGTTGAGAAAAGTTACAGAGTCTACAGGAGAAGACATGAAAATAGTAGATGAATTGATAGAGATATCTTTGTGGTCAATGATGATGAAATCTCCAACACGCTCAAAATCTGAGGCAAGTTATTATGATGCATATGGATTTGATCTGCAGGAGGACTTTTCTCAGTTCTTGGAGGAAGCAAGAAAATATGAGATGATAGAAGCAAAAGTGAAGAGCTCATCATCAGTGTACCCAGAAGAATCATCAGACAAAGAGAAAGAGAAGAAAAGTGGGAAGAAGAAGAAGAAGAAAAAATCGTGGAAAAGTTCTGTGATTTCATGGTGGAAAGCTGAGAAGAAAAGCAAGCCCACCACCAACAACAACATTAATTCTGAAGAAGAACAAAAGGTTTATTGTGGGAAAAAGCAAAGTCATGTCTCTGGTCCAATATATAACTCTGGAAAATCTCCTAATTCAAAGAAACAATGGCGTCCCCATTCTGGTCCTCTCATCACAAGTCTCTTCTCTAAATCTTCAAAGAAAGAGAATCACAATGAGATTCCCTATGTGTGTCTCCAGCAACAAAATAGTCCTCAAGATTTTCACATTCAGAACTATGGTCCCTCCTATATCGTCTCTTGA 1521 0.4076 MREDQACHSVIETECYLFCVGFDLLGDGRATDLALGDQVDNNSSESVRARTASGLDQRHFMVLDLVKMVTEISERSCDQARDVTIALNFFGKGQRVCSSLLFFWACQFADIVWFCLPSGPNDQSKQLDSVSKHHEPVPHVVARPSPNDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISKRSPSQIVLRVTIFQFNGCVGYADFAVHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVSTTTEEKQRLAKSSLSFNCKNATFRKMFPEYVDKYNQQRLSDQAASEQRASSRLMLRKVTESTGEDMKIVDELIEISLWSMMMKSPTRSKSEASYYDAYGFDLQEDFSQFLEEARKYEMIEAKVKSSSSVYPEESSDKEKEKKSGKKKKKKKSWKSSVISWWKAEKKSKPTTNNNINSEEEQKVYCGKKQSHVSGPIYNSGKSPNSKKQWRPHSGPLITSLFSKSSKKENHNEIPYVCLQQQNSPQDFHIQNYGPSYIVS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0174 506 CDD UBCc 124 278 IPR000608 -
Lele37g0174 506 MobiDBLite consensus disorder prediction 412 427 - -
Lele37g0174 506 MobiDBLite consensus disorder prediction 374 398 - -
Lele37g0174 506 PANTHER OS05G0358900 PROTEIN-RELATED 328 505 - -
Lele37g0174 506 SUPERFAMILY UBC-like 134 276 IPR016135 -
Lele37g0174 506 MobiDBLite consensus disorder prediction 439 466 - -
Lele37g0174 506 Gene3D Ubiquitin Conjugating Enzyme 123 299 IPR016135 -
Lele37g0174 506 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 118 283 IPR000608 -
Lele37g0174 506 Pfam Ubiquitin-conjugating enzyme 134 244 IPR000608 -
Lele37g0174 506 MobiDBLite consensus disorder prediction 412 466 - -
Lele37g0174 506 SMART ubc_7 121 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0174 Lele-ChrLele37 1428654 1439622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0174 135 293 Miscellaneous Gene Families AT1G17280 74.843 4.29e-82 253
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0174 37 1428654 1439622 Lele37g0174 37 1428654 1439622 ECH
Lele37g0174 37 1428654 1439622 Lele39g1246 39 21023373 21027387 hybridization
Lele37g0174 37 1428654 1439622 Lele40g0177 40 1395694 1398053 hybridization