Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1246 ATGGAAATTCGTTGTATACACAATCAACTTACCCTATGCTTTTATTCTCTTCTATTTTTTTTAATTTTTGTGAATCGGGAAGAATGCTCAAAAACTGATCTGCTGGGGAAGGATCGGTCCAACCAAGTAGCGCCTTGTTTCGAGGACTCTCAGCAGAAGAATTTCATTCTTGCCCGGAAAAGCCACCACAATACTTGTGTTTCCTGCACGTTTTTGGGGATGTGCAGGGTGTGTTCATCTTTGCTTTTCTTTTGGGCATATCAATTTGCCGATATTGTTTGGTTTGATCAGTCCAAGCAGTTAGATAGTGTTAGCAAACACCATGAGCCAGTGCCCCATGTTGTTGCTCGTCCATCGCCTAATGATATACTTGAGTGGCATTATGTGTTGGAAGGAAGCGAAGGAACACCTTTTGCAGGTGGATATTATTATGGCAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCATGACTACACCTAATGGACGCTTCATTACACAGAAAAAGATCTGCTTGTCCATGAGTGATTTTCATCCAGAAAGTTGGAATCCTATGTGGTCCGTATCAAGCATACTTACCGGGCTTCTATCCTTTATGATGGATACCAGTCCAACGACTGGCAGTGTGAGCACTACTACTGAAGAGAAGCAACGTTTAGCAAAATCTTCCCTTGCTTTCAATTGCAAGAATGCAACATTCAGGAAAATGTTCCCTGAGTATGTTGATAAGTACAACCAGCAGCGGCTTTCTCAGCAAGCTGCCTCTGAACAAACGGCAAGTTCAAGGCTCATATTGAGAAAAGTTACAGAGTCTACAGGAGAAGACATGAAAGTAGTAGATGAATTGAAAGAGCAGATTGCAATTGCTGTCAAGGGATGGCCTAGAACATAG 906 0.4194 MEIRCIHNQLTLCFYSLLFFLIFVNREECSKTDLLGKDRSNQVAPCFEDSQQKNFILARKSHHNTCVSCTFLGMCRVCSSLLFFWAYQFADIVWFDQSKQLDSVSKHHEPVPHVVARPSPNDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFITQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVSTTTEEKQRLAKSSLAFNCKNATFRKMFPEYVDKYNQQRLSQQAASEQTASSRLILRKVTESTGEDMKVVDELKEQIAIAVKGWPRT 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1246 301 CDD UBCc 98 246 IPR000608 -
Lele39g1246 301 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 103 226 - -
Lele39g1246 301 SUPERFAMILY UBC-like 108 245 IPR016135 -
Lele39g1246 301 Pfam Ubiquitin-conjugating enzyme 108 212 IPR000608 -
Lele39g1246 301 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 92 251 IPR000608 -
Lele39g1246 301 Gene3D Ubiquitin Conjugating Enzyme 98 267 IPR016135 -
Lele39g1246 301 FunFam Ubiquitin-conjugating enzyme E2 J2-like 97 263 - -
Lele39g1246 301 SMART ubc_7 95 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1246 Lele-ChrLele39 21023373 21027387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1246 109 263 Miscellaneous Gene Families AT1G17280 87.742 3.02e-102 297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1246 39 21023373 21027387 Lele39g1246 39 21023373 21027387 ECH
Lele37g0174 37 1428654 1439622 Lele39g1246 39 21023373 21027387 hybridization
Lele38g0184 38 1478237 1480609 Lele39g1246 39 21023373 21027387 hybridization