Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0177 ATGGCGGAGAAAGCATGCATCAGACGCCTTCAGAAGGAATTTAGAGCTCTTTGTAAAGAGCCAGTGTCCCATGTTGTTGCTCGTCCATCACCTAATGATATACTTGAGTGGCATTATGTGTTGGAGGGAAGCGAAGGAACACCTTTTGCAGGTGGATATTATTATGGCAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCATGACTACACCTAATGGTCGCTTCATTACACAGAAAAAGATCTGCTTGTCCATGAGTGATTTTCATCCAGAAAGTTGGAATCCTATGTGGTCCGTATCAAGCATACTTACGGGGCTTCTATCCTTTATGATGGACACGAGTCCAACGACTGGCAGTGTGAGCACTACTACTGAAGAGAAGCAACGTTTAGCAAAATCTTCCCTTGCTTTCAATTGCAAGAATGCAACATTCAGGAAAATGTTCCCTGAGTATGTTGATAAGTACAACCAGCGGCGGCTTTCCGAGCAAGCAGCTTCCGAATCTCGTGACAAAAGTTCAAGGCCCATGTTGAGAAAAGTTACGGAGTCTACAGGAGAAGACATGAAAGTAGAAGATGAATTGAAAGAGGTGAGGAAAAACAGAAAGCAATCTTTACCCACATGGATGATGTTGTTGCTCTTCTCCATTTTTGGGCTTATAATGGCATTACCTCTGCTTCAGCTGTGA 702 0.4302 MAEKACIRRLQKEFRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFITQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVSTTTEEKQRLAKSSLAFNCKNATFRKMFPEYVDKYNQRRLSEQAASESRDKSSRPMLRKVTESTGEDMKVEDELKEVRKNRKQSLPTWMMLLLFSIFGLIMALPLLQL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0177 233 CDD UBCc 7 157 IPR000608 -
Lele40g0177 233 FunFam Ubiquitin-conjugating enzyme E2 34 1 177 - -
Lele40g0177 233 MobiDBLite consensus disorder prediction 167 193 - -
Lele40g0177 233 Gene3D Ubiquitin Conjugating Enzyme 1 180 IPR016135 -
Lele40g0177 233 MobiDBLite consensus disorder prediction 168 193 - -
Lele40g0177 233 SUPERFAMILY UBC-like 6 156 IPR016135 -
Lele40g0177 233 SMART ubc_7 8 162 - -
Lele40g0177 233 Pfam Ubiquitin-conjugating enzyme 9 123 IPR000608 -
Lele40g0177 233 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Lele40g0177 233 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 7 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0177 Lele-ChrLele40 1395694 1398053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0177 1 233 Miscellaneous Gene Families AT1G17280 77.637 4.25e-136 380
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0177 40 1395694 1398053 Lele40g0177 40 1395694 1398053 ECH
Lele37g0174 37 1428654 1439622 Lele40g0177 40 1395694 1398053 hybridization
Lele38g0184 38 1478237 1480609 Lele40g0177 40 1395694 1398053 hybridization