Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1209 ATGGCATTTCACGTTGCTTGCCCAATTACATGTCGCCGAATCTGCTTCTGCTCGCTAGGGTTTCCTCGTGCCCTCCATACATCGAAGGCCAAGCATGAGTTCCTGGACGATGTGGCAAGAATCGATGAGTTTGTTAAGGATCCTTTGGGAATTAGGGCTCCAGAAAGGGAACGGACCGTGCAAGTCGCCGTCCCTAAGGTTGAGCCGCCGCCGCCGCCACCTCAGCGGCAGTTGCAGTCAACGCCGGCGGCTGATGGGGTCCCCGTTGTCGATGAGGTGGACGAGGCAGTGTCAACTAAGGCTAAAAGGGTCGCGTTGCAGCGGAAGGGGGCTGCCGCAATGATTGCTGCCGAGGAGTACGCTCGTCAGTTTGAGTCCGCGGATGCGGTGGATGCATCTGGGAATCTTGCTGGAGAAGAACATGGTAATTTGAATGTCAAGGTCTTTTGCCGAATGTGCAATCGTGTTGAAAATGAAGGAAGTGAAAGAGCTAAAACAATGCTTTCATGCAAAAGTTGTGGCAAGAAGTACCATCGGAGCTGCTTAAAAAGTTGGGCTCAACATAGAGATTTATTTCATTGGAGTTCATGGACTTGTCGTGCTTGCCGAATTTGTGAGGCCTGTAGAAGGACAGGAGATCCAAGTAAGTTCATGTTTTGTAAAAGGTGTGATGGTGCTTATCATTGTTATTGTCTACATCCTCCTCACAAGAATGTTAGTTCTGGGCCTTATTTGTGCTCAAAACATACAAGGTGTCACAGCTGTGGATCCAATGTTCCTGGAAATGGTCTAAGTGTGAGGTGGTTTCTGGGATACACCTGCTGTGATGCATGTGGAAGATTGTTTGTGAAAGGAAACTACTGTCCCGTTTGTCTGAAGGTCTATAGAGATTCAGAATCGACACCAATGGTTTGCTGTGATGTTTGCCAGCGTTGGGTTCACTGCCAGTGTGATAATATAAGTGATGAAAAATATCTTCAATTTCAAGTGGATGGGAATCTGCAGTATAAATGCCCCACATGTCGTGGGGAATGTTATAAGGTCAAGGATCTTGAGGATGCTGTTAAAGAACTTTGGAAGAGAAGAGATATCGCTGACAGAGATTTAATTGCCAGCTTGAGGGCTGCAGCTGGTTTACCGACTCAAGAAGAAATATTTTCTATTTCACTATATTCAGATGATGAGGATAGTGAGCCTGTAAAAGCGAAGAGTGAATCTGTGCGATCTTTTAAGTTCTCTCTGAAGAATTTCCCTGATAATTCAACAAAGAAGACAAAAGATTATGCAAAGAAATGTTCAAGTAAAAAGCATTCCAAGAAAAAGGACTATCAGACTGGTAAAACTGATCCAAGTTTGGAAGGACATAGTGATGTCAAATCCGTTCATAGCTTGGATGATGATATCCAATCCCACAGACATGAAGGTCCTGATGTTTATTCTTCCCCTGCTGGTGGAAGCCCGTGTCAAACTGAAGGTTATGTTAATCAGCCAGGAATTTTGAAACAGAAGTTTGCAGATGAGATGATGATCAGTGATGAAGAGAGAAAACCTGGAGTTGTTCGAATTAAGAGCAGTAAGGCTCAAACTCTTGATAGTGAAGAGGAGGCTGGAAAAAGTGGTGATAAGAATCAGAATGTAAAGGGAAAGAAGTTGGTTATAAATTTTGGGGCACGGAAAATTAATGTGACTAATTCTCCACGATCTGATACTTCAAGTTGCCAAAGAGATCAAGATCTTGTTAGCACTAATGGCAATGAAGATATTAGCCAATCAGGGAAAGGAGACAAGTTTTTGTTAGACAGACATGATGGCACAGCTAGAAATGCTGTTGGTAAAGGAAACCGAGTTGATTCTTGTCAATCAAAAGATTTAAAGGTTTCAGGAAGAGAAGGAAATTTGATAAAGCCTGCGAAAATAAAGCCAGAAGTTTCTGAGTTAAACTCAGCCTCTTTTGGGAGCAATGTTGCTGATGGGAGTGAATCTGGTCCCATAGAGCGACCTCGCATCTTGATTGGAAAGCGCCGCACTGAGGGAAAGACTGGTCAAGACGGAACTGTACAAACTACATCACAATATGAGAGGAAGTATTTGGGGAAGCAGTCAGAAGGCAGGTCTGACGAGACAGATGGCAATGCTAATCATAAACCATCACATTCTTTGCCAAAAGACCCTAAACCTTTATTGAGATTGAAATTTAAGAAACCTAGCATTGAAAGTCAAAATTCTCTTAATCTCGAGGGTGAGAAGATTACAATCAAGGGACAGAGGTCAAAAAGGAAGAGGCCTTCACCTTTTATGGAGAAAGTGTCGGACAATGAGGATGAAGATGTTGCACAATTGCATCAAGATGGTCCAATGGATGAAATCATGGATGCTAATTGGATATTGATGAAATTGGGTAAAGATGCCATTGGAAAGGGAGTTGAAATTCATCAGTCATCTGACAATTCTTGGCACAAGGGATCGGTCACTAATGTAATTGAAGGAACTTCAAAGATATCTGTTACCTTAGAGGATGGCAAGGTGAAGACCTTGGAGCTCCGTAAGCAAGGAGTCCGTTTTGTTCCTCAAAAGCAAAAGAGATCAAAAGCATGA 2595 0.4316 MAFHVACPITCRRICFCSLGFPRALHTSKAKHEFLDDVARIDEFVKDPLGIRAPERERTVQVAVPKVEPPPPPPQRQLQSTPAADGVPVVDEVDEAVSTKAKRVALQRKGAAAMIAAEEYARQFESADAVDASGNLAGEEHGNLNVKVFCRMCNRVENEGSERAKTMLSCKSCGKKYHRSCLKSWAQHRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLHPPHKNVSSGPYLCSKHTRCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCQCDNISDEKYLQFQVDGNLQYKCPTCRGECYKVKDLEDAVKELWKRRDIADRDLIASLRAAAGLPTQEEIFSISLYSDDEDSEPVKAKSESVRSFKFSLKNFPDNSTKKTKDYAKKCSSKKHSKKKDYQTGKTDPSLEGHSDVKSVHSLDDDIQSHRHEGPDVYSSPAGGSPCQTEGYVNQPGILKQKFADEMMISDEERKPGVVRIKSSKAQTLDSEEEAGKSGDKNQNVKGKKLVINFGARKINVTNSPRSDTSSCQRDQDLVSTNGNEDISQSGKGDKFLLDRHDGTARNAVGKGNRVDSCQSKDLKVSGREGNLIKPAKIKPEVSELNSASFGSNVADGSESGPIERPRILIGKRRTEGKTGQDGTVQTTSQYERKYLGKQSEGRSDETDGNANHKPSHSLPKDPKPLLRLKFKKPSIESQNSLNLEGEKITIKGQRSKRKRPSPFMEKVSDNEDEDVAQLHQDGPMDEIMDANWILMKLGKDAIGKGVEIHQSSDNSWHKGSVTNVIEGTSKISVTLEDGKVKTLELRKQGVRFVPQKQKRSKA 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1209 864 MobiDBLite consensus disorder prediction 562 590 - -
Lele32g1209 864 MobiDBLite consensus disorder prediction 647 727 - -
Lele32g1209 864 SMART PHD_3 204 250 IPR001965 -
Lele32g1209 864 SMART PHD_3 149 203 IPR001965 -
Lele32g1209 864 SMART PHD_3 287 342 IPR001965 -
Lele32g1209 864 FunFam PHD finger family protein 144 259 - -
Lele32g1209 864 MobiDBLite consensus disorder prediction 421 491 - -
Lele32g1209 864 MobiDBLite consensus disorder prediction 520 549 - -
Lele32g1209 864 ProSitePatterns Zinc finger PHD-type signature. 150 202 IPR019786 -
Lele32g1209 864 MobiDBLite consensus disorder prediction 520 545 - -
Lele32g1209 864 CDD PHD_SF 149 202 - -
Lele32g1209 864 ProSiteProfiles Zinc finger PHD-type profile. 147 205 IPR019787 -
Lele32g1209 864 ProSiteProfiles Zinc finger PHD-type profile. 285 344 IPR019787 -
Lele32g1209 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 344 IPR013083 -
Lele32g1209 864 SUPERFAMILY FYVE/PHD zinc finger 141 204 IPR011011 -
Lele32g1209 864 PANTHER HL01030P-RELATED 97 585 - -
Lele32g1209 864 SUPERFAMILY FYVE/PHD zinc finger 193 255 IPR011011 -
Lele32g1209 864 MobiDBLite consensus disorder prediction 697 727 - -
Lele32g1209 864 MobiDBLite consensus disorder prediction 65 85 - -
Lele32g1209 864 MobiDBLite consensus disorder prediction 562 599 - -
Lele32g1209 864 MobiDBLite consensus disorder prediction 681 696 - -
Lele32g1209 864 FunFam PHD finger family protein 282 344 - -
Lele32g1209 864 SUPERFAMILY FYVE/PHD zinc finger 286 346 IPR011011 -
Lele32g1209 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 259 IPR013083 -
Lele32g1209 864 MobiDBLite consensus disorder prediction 442 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1209 Lele-ChrLele32 13058987 13066271 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1376 29 20487620 20496927 Lele32g1209 32 13058987 13066271 hybridization
Lele30g0181 30 1827493 1834700 Lele32g1209 32 13058987 13066271 hybridization