Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele30g0181 | ATGGCATTTCACGTTGCTTGCCCAATTACATGTCGCCGAATCTGCTTCTGCTCGCTAGGGTTTCCTCGTGCCCTCCATACATCGAAGGCCAAGCATGAGTTCCTGGACGATGTGGCAAGAATCGATGAGTTTCTTAAGGATCCTTTGGGAATTAGGGCTTCAGAAAGGGAACGGACCGTGCAAGTCTCCGTCCCTAAGGTTGAGCCGCCGCCGCCGCCGCCACCTCAGAGGCAGTTGCAGTCAACGCCGGCGGCTGATGGGGTCCCCGTTGTCGATGAGGTGGACGATGCAGTGTCAACTAAGGCTAAAAGGGTCGCGTTGCAGCGGAAGGGGGCTGCCGCGATGATTGCTGCCGAGGAGTACGCTCGTCAGTTTGAGTCCGCGGATGCGGTGGATGCATCTGGGAATCTTGCTGGAGAAGAACATGGTAATTTGAATGTCAAGGTCTTTTGCCGAATGTGCAATCGTGTTGAAAATGAAGGAAGTGAAAGAGCTAAAAAAATGCTTTCATGCAAAAGTTGTGGCAAGAAGTACCATCGGAGCTGCTTAAAAAGTTGGGCTCAACATAGAGATTTATTTCATTGGAGTTCATGGACTTGTCGTGCTTGCCGAATTTGTGAGGCCTGTAGAAGGACAGGAGATCCAAGTAAGTTCATGTTTTGTAAAAGGTGTGATGGTGCTTATCATTGTTATTGTCTACATCCTCCTCATAAGAATGTTAGTTCTGGGCCTTATTTGTGCTCAAAACATACAAGTTGTCACAGCTGTGGATCCAATGTTCCTGGAAATGGTCTAAGTGTGAGGTGGTTTCTGGGATACACCTGCTGTGATGCATGTGGAAGATTGTTTGTGAAAGGAAACTACTGTCCCGTTTGTCTGAAGGTCTATAGAGATTCAGAATCGACACCAATGGTTTGCTGTGATGTTTGCCAGCGTTGGGTGCACTGCCATTGTGATAATATAAGTGATGAAAAATATCTTCAATTTCAAGTGGATGGGAATCTGCAGTATAAATGCCCCACATGTCGTGGGGAATGTTATAAGGTCAAGGATCTTGAGGATGCTGTTAAAGAACTTTGGAAGAGAAGAGATATCGCTGACAGAGATTTAATTGCCAGCTTGAGGGCTGCAGCTGGTTTACCGACTCAAGAAGAAATATTTTCTATTTCACTATATTCAGATGATGAGGATAGTGAGCCTGTAAAAGCGAAGAGTGAATCTGTGCGATCTTTTAAGTTCTCTCTGAAGAATTTCTCTGATAATTCAACAAAGAAGACAAAAGATTATGCAAAGAAATGTTCAAGTAAAAAGCATTCCAAGAAAAAGGACTATCAGACTGGTGAAACTGATCCAAGTTTGGAAGGACATAGTGATGTCAAATCTGTTCATAGCTTGGATGATGATATCCAATCCCACAGACATGAAGGTCCTGATGTTTATTCTTCCCCTGCTGGTGGAAGCCTGAGTCAAACTGAAGGTTATGTTAATCAGCCAGGAATTTTGAAACAGAAGTTTGCAGATGAGATGATGATCAGTGATGAAGAGAGAAAACCTAGAGTTGTTCGAATTAAGAGCAGTAAGGCTCAAACTCTTGATAGTGAAGAGGAGGCTGGAAAAAGTGGTGATAAGAATCAGAATGTAAAGGGAAAGAAGTTGGTTATAAATTTTGGGGCACGGAAAATTAATGTGACTAATTCTCCACGATCTGATACTTCAAGTTGCCAAAGAGATCAAGATCTTGTTAGCACTAATGGCAATGAAGATATTAGTCAATCAGGGAAAGGAGACAAGTTTATGTTAGACAGACATGATGGCACAGCTAGAAATGCTGTTGGTAAAGGAAACCGAGTTGATTCTTGTCAATCAAAAGATTTAAAGGTTTCAGGAAGAGAAGGAAATTTGATAAAGCCTGCGAAAATTAAGCCAGAAGTTTCTGAGTTAAACTCAGCCTCTTTTAGGAGCAATGTTGCTGATGGGAGTGAATCTGGTTTCATAGAGCGACCTCATATCTTGATTGGAAAGCGCCGCACTGAGGGAAAGACTGGTCAAGACGGAACTGTACAAACTACATCACAATGTGAGAGGAAAGGCAGGTCTGACGAGACAGATGACAATGCTAATCATAAACCATCACATTCTTTGCCAAAAGACCCTAAACCTTTATTGAGATTGAAATTTAAGAAACCTAGCATTGAAATTCAAAATTCTCTTAATCTCGAGGGTGAGAAGATTACAATCAAGGGACAGAGGTCAAAAAGGAAGAGGCCTTCACCTTTTATGGAGAAAGTGTCGAACAATGAGGATGAAGATGTTGCACAATTGCATCAAGATGGTCCAATGGATAAAATCATGGATGCTAATTGGATATTGATGAAATTGGGTAAAGATGCCATTGGAAAGGGAGTTGAAATTCATCAGTCATCTGACAATTCTTGGCACAAGGGATCGGTCACTAATGTAATTGAAGGAACTTCAAAGATATCTGTTACCTTAGAGGATGGCAAGGTGAAGACCTTGGAGCTCCGTAAGCAAGGAGTCCGTTTTGTTCCTCAAAAGCAAAAGAGATCAAAAGCTTGA | 2577 | 0.4249 | MAFHVACPITCRRICFCSLGFPRALHTSKAKHEFLDDVARIDEFLKDPLGIRASERERTVQVSVPKVEPPPPPPPQRQLQSTPAADGVPVVDEVDDAVSTKAKRVALQRKGAAAMIAAEEYARQFESADAVDASGNLAGEEHGNLNVKVFCRMCNRVENEGSERAKKMLSCKSCGKKYHRSCLKSWAQHRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLHPPHKNVSSGPYLCSKHTSCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDVCQRWVHCHCDNISDEKYLQFQVDGNLQYKCPTCRGECYKVKDLEDAVKELWKRRDIADRDLIASLRAAAGLPTQEEIFSISLYSDDEDSEPVKAKSESVRSFKFSLKNFSDNSTKKTKDYAKKCSSKKHSKKKDYQTGETDPSLEGHSDVKSVHSLDDDIQSHRHEGPDVYSSPAGGSLSQTEGYVNQPGILKQKFADEMMISDEERKPRVVRIKSSKAQTLDSEEEAGKSGDKNQNVKGKKLVINFGARKINVTNSPRSDTSSCQRDQDLVSTNGNEDISQSGKGDKFMLDRHDGTARNAVGKGNRVDSCQSKDLKVSGREGNLIKPAKIKPEVSELNSASFRSNVADGSESGFIERPHILIGKRRTEGKTGQDGTVQTTSQCERKGRSDETDDNANHKPSHSLPKDPKPLLRLKFKKPSIEIQNSLNLEGEKITIKGQRSKRKRPSPFMEKVSNNEDEDVAQLHQDGPMDKIMDANWILMKLGKDAIGKGVEIHQSSDNSWHKGSVTNVIEGTSKISVTLEDGKVKTLELRKQGVRFVPQKQKRSKA | 858 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele30g0181 | 858 | Coils | Coil | 855 | 858 | - | - | |
| Lele30g0181 | 858 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 260 | IPR013083 | - | |
| Lele30g0181 | 858 | ProSiteProfiles | Zinc finger PHD-type profile. | 286 | 345 | IPR019787 | - | |
| Lele30g0181 | 858 | MobiDBLite | consensus disorder prediction | 56 | 87 | - | - | |
| Lele30g0181 | 858 | SUPERFAMILY | FYVE/PHD zinc finger | 286 | 344 | IPR011011 | - | |
| Lele30g0181 | 858 | ProSitePatterns | Zinc finger PHD-type signature. | 151 | 203 | IPR019786 | - | |
| Lele30g0181 | 858 | MobiDBLite | consensus disorder prediction | 522 | 550 | - | - | |
| Lele30g0181 | 858 | MobiDBLite | consensus disorder prediction | 440 | 475 | - | - | |
| Lele30g0181 | 858 | MobiDBLite | consensus disorder prediction | 427 | 495 | - | - | |
| Lele30g0181 | 858 | MobiDBLite | consensus disorder prediction | 522 | 546 | - | - | |
| Lele30g0181 | 858 | MobiDBLite | consensus disorder prediction | 694 | 721 | - | - | |
| Lele30g0181 | 858 | SUPERFAMILY | FYVE/PHD zinc finger | 142 | 206 | IPR011011 | - | |
| Lele30g0181 | 858 | MobiDBLite | consensus disorder prediction | 65 | 79 | - | - | |
| Lele30g0181 | 858 | SMART | PHD_3 | 150 | 204 | IPR001965 | - | |
| Lele30g0181 | 858 | SMART | PHD_3 | 288 | 343 | IPR001965 | - | |
| Lele30g0181 | 858 | SMART | PHD_3 | 205 | 251 | IPR001965 | - | |
| Lele30g0181 | 858 | ProSiteProfiles | Zinc finger PHD-type profile. | 148 | 206 | IPR019787 | - | |
| Lele30g0181 | 858 | MobiDBLite | consensus disorder prediction | 667 | 721 | - | - | |
| Lele30g0181 | 858 | FunFam | PHD finger family protein | 145 | 260 | - | - | |
| Lele30g0181 | 858 | PANTHER | HL01030P-RELATED | 53 | 531 | - | - | |
| Lele30g0181 | 858 | MobiDBLite | consensus disorder prediction | 563 | 591 | - | - | |
| Lele30g0181 | 858 | FunFam | PHD finger family protein | 283 | 345 | - | - | |
| Lele30g0181 | 858 | MobiDBLite | consensus disorder prediction | 563 | 601 | - | - | |
| Lele30g0181 | 858 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 283 | 345 | IPR013083 | - | |
| Lele30g0181 | 858 | SUPERFAMILY | FYVE/PHD zinc finger | 195 | 256 | IPR011011 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele30g0181 | Lele-ChrLele30 | 1827493 | 1834700 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele30g0181 | 30 | 1827493 | 1834700 | Lele31g0201 | 31 | 1988351 | 1996923 | hybridization | |
| Lele30g0181 | 30 | 1827493 | 1834700 | Lele32g1209 | 32 | 13058987 | 13066271 | hybridization |