Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1183 ATGGATGGGTATGAAGCTACAAGAATTGTTTTCTCACGGATCCAAAACTTGGACCCTGAGAATGCTTCCAAAATCATGGGTCTGCTTCTTATTCAAGACCATGGGGAAAAAGAAATGATTAGATTAGCATTTGGCCCTGAAGCTTTGGTTCACTCTGTGATTGTCAAAGCTCGCAAAGACTTGGGATTATCCTCGTACTCTTCGTCTACACCTTCAACTCCTACTCCTCCACCTTCTTCATCACCATCTTCTTTCCTTTCAAGGCAAAATTCTACTTATTCCAGGCTAAGCAACACTGGAGTAAACTTTCCTCCTCCTGCTCTTACAATCCCAAACCCCTCTTCACCGTCTTGGGCTAATAATTTGATGAGCCCAAAAAACAATTTACTTGTTGGCTCTAATTCTCCCAATGTCAATGTTCCTTCACCATCTTCTTCCTTACCCCTTTATGGGTCTGATCCTATTGACGAGTTTCAACTTCAGGACCAGCTTTCTTTCCTCAATGATGGGTCCCCTACCCTTGGCAGGAAAAACCCAGATTTGTTCTATCCCCAATGTGACTTATCTTCGAGTCCTACCGGCGGCGATGCTACCGGTTTTCCCTCTTATGGGTGGGGCGGGTCGGTCCATCGCCGGAGTTGCTCCGTCAATGAAGCTTGTTTGGGGTCTGAGGATCCGAATTCTGGTTTGGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTATTGCAAAAACGGTACTAGCTGTAGGTTCCTTCATGGAGGAGGAATTGGAGATTCTGATGGCGTTTCACTGGTTGGGTCTCCTAGTAAGATTGAGATGTTGGACCAGAGCAGCCATGAGCTTCTCAGATCTAAAACTGCTCAACAGCAGAGATTGCTCATGGCTTCTTCTTTGCCTTACTCTCCAAAAGGCATGAATTTTCTACTACAACAGCAGCAAAATGATACCCAAAGAGCTGCAACTGCACTTGTGATGAACGAGGATTTGCACAAGTTTGGTCGATCCAGGCTTGAAAGAATCGATTTTTCACTCAATGGAGGTTGTGGAATAGGAAACCCAGCTTCGAGGCAGATCTACTTGACCTTCCCAGCTGATAGTACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCTGTTCAAGATGTGAGGATTCCATACCAGCAGAAGCGAATGTTTGGATTTGTGACCTTTGTTTATCCAGAGACCGTAAAGCTCATTCTGTCAAAGGGAAACCCCCATTTCGTCTGTGATGCTCGCGTGCTAGTCAAGCCTTACAAGGAAAAAGGCAAAGTCCCAGACAAGAAACAAGTCGAAAGGGGTGATTTCTCACCATGTCGTACTCCTACTGGACTTGATGCTAGAGATCCATTTGATCTTCAAATTGGAGGGAGAACGTACTATAATACTCAAGATATGCTGTGGAGGAGGAAGTTGGAGGAGCAAACTGATTTGCAGCAAGCTATTGAGCTCCAAAGTAGGAGGCTCATGGGTCTACAACTTCTTGACATCAAGAAGCAACACCAGAGGGCGTTTTCAACTGGAAGCCCAATTCCTTCCCCTACTCAATCTCCCAACATGTTCAATCAGAATCTTGTTCTTCCTTCATTTCACGGTGGCAGCTCTGAGGCTTCTCTAGAGGAGAGTGTTTTGATCTCTGCTCCTTCTAGCACGGCACCGATTTCTGTTGCTCAGCAGCCACCAATGCAGCCAAAGTGGCAGTGA 1737 0.4548 MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVIVKARKDLGLSSYSSSTPSTPTPPPSSSPSSFLSRQNSTYSRLSNTGVNFPPPALTIPNPSSPSWANNLMSPKNNLLVGSNSPNVNVPSPSSSLPLYGSDPIDEFQLQDQLSFLNDGSPTLGRKNPDLFYPQCDLSSSPTGGDATGFPSYGWGGSVHRRSCSVNEACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGGIGDSDGVSLVGSPSKIEMLDQSSHELLRSKTAQQQRLLMASSLPYSPKGMNFLLQQQQNDTQRAATALVMNEDLHKFGRSRLERIDFSLNGGCGIGNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQVERGDFSPCRTPTGLDARDPFDLQIGGRTYYNTQDMLWRRKLEEQTDLQQAIELQSRRLMGLQLLDIKKQHQRAFSTGSPIPSPTQSPNMFNQNLVLPSFHGGSSEASLEESVLISAPSSTAPISVAQQPPMQPKWQ 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1183 578 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 254 IPR000571 GO:0046872
Lele32g1183 578 Gene3D - 224 295 - -
Lele32g1183 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 357 433 IPR000504 GO:0003723
Lele32g1183 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369 414 IPR000504 GO:0003723
Lele32g1183 578 SUPERFAMILY RNA-binding domain, RBD 368 449 IPR035979 GO:0003676
Lele32g1183 578 SMART c3hfinal6 231 255 IPR000571 GO:0046872
Lele32g1183 578 CDD RRM_AtC3H46_like 359 428 IPR034365 -
Lele32g1183 578 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 364 435 - -
Lele32g1183 578 SUPERFAMILY CCCH zinc finger 232 254 IPR036855 GO:0046872
Lele32g1183 578 ProSiteProfiles Zinc finger C3H1-type profile. 229 256 IPR000571 GO:0046872
Lele32g1183 578 Gene3D - 356 452 IPR012677 -
Lele32g1183 578 MobiDBLite consensus disorder prediction 516 539 - -
Lele32g1183 578 MobiDBLite consensus disorder prediction 65 108 - -
Lele32g1183 578 SMART rrm1_1 358 428 IPR000504 GO:0003723
Lele32g1183 578 MobiDBLite consensus disorder prediction 82 105 - -
Lele32g1183 578 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1183 Lele-ChrLele32 12203171 12205423 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1346 29 20116417 20118683 Lele32g1183 32 12203171 12205423 hybridization
Lele30g0207 30 2434589 2437550 Lele32g1183 32 12203171 12205423 hybridization