Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1346 ATGGATGGGTATGAGGCTACCAGAATTGTTTTCTCACGGATCCAAAACTTGGATCCTGAGAATGCTTCCAAAATCATGGGTTTGCTTCTGATTCAAGACCATGGTGAGAAAGAAATGATTAGATTAGCATTTGGTCCTGAAGCTCTGGTTCACTCTGTGATTGTTAAAGCTCGCAAAGACTTGGGATTATCCTCGTTCTCTCCGTCTACGCCTTCAAGTCCTCCTCCTCCTCCTCCTCCTTCTTCATCACCATCTTCTTTCCTTTCAAGGCAAAATTCTACTCCTTCAAGGCTAAGCAACACTGGAGTCAACTTTCCTCCTCCTGCTCTTACAATCCCAAACCCCTCCTCTTCGTCAGCGTCTTGGGCTGATAACTTGATGAGCCCAAACAACAATTTACTTGTTGGCTCTAATTCTCCTCATGTCAACGTTCATTCACCATCTTCTTCCTTACCCTTTTATGGGTCTGATCCTATTGACGAGTTTCAACTCCAGGACCAGCTTTCTTTCCTCAATGATGGGTCCCCTACCCTTGCCAGGAAAAACCCAGATTTGTTCTATCCCCAATCTGACTTATCTTCGAGTCCTTCCGGCGGCGACGCTGCCGGTTTTCCCTCTTATGGGTGGGGCGGGTCAGTCCATCGCCGGAGTTGCTCAGTCAATGAAGCTTGTTTGGGGTCTGAGGATCCGAATTCTGGGTTGGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTATTGCAAAAACGGTACTAGCTGTAGGTTCCTTCATGGAGGAGGAATTGGAGATTCTGAAGGCGTTTCAATGGTTGGGTCTCCTAGTAAGATTGAGATAATGGACCAGAGCAGCCATGAGCTTCTCAGATCTAAAACTGCTCAACAGCAAAGATTGCTCATGGCTTCTTCTTTGCCTTACTCTCCAAAAGGCATGAATTTTCTACTACAACAGCAGCAAAATGATACCCTGAGAGCTGCAGCTGCACTTATGATGAACGAGGATTTGCGCAAGTTTGGGCGATCCAGGCTTGAAAGAAACGATTTTTCACTTAATGGAGGTTCTGGAATAGGAAACCCAGCTTCGAGGCAGATCTACTTGACCTTTCCAGCTGATAGTACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCTGTTCAAGATGTGAGGATTCCATACCAGCAGAAGCGAATGTTCGGATTTGTCACCTTTGTTTATCCAGAGACTGTGAAGCTCATTCTGTCAAAGGGAAACCCCCATTTCGTTTGTGATGCTCGCGTACTAGTCAAGCCTTACAAGGAAAAAGGCAAAGTCCCAGACAAGTACAGGAAACAAGTTGAAAGGGGTGATTTCTCACCATGTGGTACTCCTACCGGACTTGATGCTAGAGATCCGTTTGATCTTCAATTTGGAGGGAGAATGTCCTACAATACTCAAGATATGCTGTGGAGGAGGAAGTTGGAGGAGCAAACTGATTTGCAGCAAGCTATTGAGCTCCAAAGTAGGAGGCTCATGGGTCTACAACTTCTTGACATCAAGAAGCAGCACCATAGGGCGTTTTCAACTGGAGGCCCAATTCCTTCCCCTACGCAATCTCCCAACATGTTCAATCAGAATCTTGTTCTTCCTTCCTTTCATGGTGGCAACTCTGAAGCTTCTCTAGAGGAGTGTGTTTTGAGCTCTGCTCCTCCTACTAGCACGGCATCGATTTCTGTTGCTCAGCAGCCACCAATGCAGCTAAAGTAA 1752 0.4595 MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVIVKARKDLGLSSFSPSTPSSPPPPPPPSSSPSSFLSRQNSTPSRLSNTGVNFPPPALTIPNPSSSSASWADNLMSPNNNLLVGSNSPHVNVHSPSSSLPFYGSDPIDEFQLQDQLSFLNDGSPTLARKNPDLFYPQSDLSSSPSGGDAAGFPSYGWGGSVHRRSCSVNEACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGGIGDSEGVSMVGSPSKIEIMDQSSHELLRSKTAQQQRLLMASSLPYSPKGMNFLLQQQQNDTLRAAAALMMNEDLRKFGRSRLERNDFSLNGGSGIGNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQVERGDFSPCGTPTGLDARDPFDLQFGGRMSYNTQDMLWRRKLEEQTDLQQAIELQSRRLMGLQLLDIKKQHHRAFSTGGPIPSPTQSPNMFNQNLVLPSFHGGNSEASLEECVLSSAPPTSTASISVAQQPPMQLK 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1346 583 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 368 439 - -
Lele29g1346 583 Gene3D - 228 296 - -
Lele29g1346 583 MobiDBLite consensus disorder prediction 85 107 - -
Lele29g1346 583 MobiDBLite consensus disorder prediction 65 124 - -
Lele29g1346 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 361 437 IPR000504 GO:0003723
Lele29g1346 583 ProSiteProfiles Zinc finger C3H1-type profile. 233 260 IPR000571 GO:0046872
Lele29g1346 583 CDD RRM_AtC3H46_like 363 432 IPR034365 -
Lele29g1346 583 Gene3D - 360 455 IPR012677 -
Lele29g1346 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 373 418 IPR000504 GO:0003723
Lele29g1346 583 SUPERFAMILY CCCH zinc finger 236 258 IPR036855 GO:0046872
Lele29g1346 583 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 551 - -
Lele29g1346 583 SMART c3hfinal6 235 259 IPR000571 GO:0046872
Lele29g1346 583 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 238 258 IPR000571 GO:0046872
Lele29g1346 583 SUPERFAMILY RNA-binding domain, RBD 372 446 IPR035979 GO:0003676
Lele29g1346 583 SMART rrm1_1 362 432 IPR000504 GO:0003723
Lele29g1346 583 MobiDBLite consensus disorder prediction 69 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1346 Lele-ChrLele29 20116417 20118683 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1346 29 20116417 20118683 Lele31g0230 31 2356809 2359054 hybridization
Lele29g1346 29 20116417 20118683 Lele32g1183 32 12203171 12205423 hybridization