Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0207 ATGGATGGGTATGAAGCTACAAGAATTGTTTTCTCACGGATCCAAAACTTGGACCCTGAGAATGCTTCCAAAATCATGGGTCTGCTTCTGATTCAAGACCATGGTGAGAAAGAAATGATTAGATTAGCATTTGGTCCTGAAGCTCTGGTTCACTCTGTGATTGTCAAAGCTCGCAAAAACTTGGGATTATCCTCGTACTCTCCGTCTACCCCTTCAACTCCTACTCCTCCTCCTCCATCTTCTTCATCACCATCTTCTTTCCTTTCAAGGCAAAATTCTACTCCTTCATGGCTAAGCCACACTGGAGTAAACTTTCCTCCTCCTGCTCTTACAATCCCAAACTCCTCTTCTTCACCGTCTTGGGCTGATAATTTGATGAGCCCAAAAAACAATTTACTTGTTGGCTCTAATTCTCCTCATGTCAATGTTCCTTCACCGTCTTCTTCCTTACCCTTTTATGGGTCTGATCCTATTGACGAGTTTCAACTTCAGGACCAGCTTTCTTTCCTCAATGATGGGTCCCCTACCCTTGGCAGGAAAAACCCAGATTTGTTCTATCCCCAATCTGACTTATCGTCAAGTCCTACCGACGGCGACGCTACCGGTTTTCCCTCTTATGGGTGGGGCGGGTCGGTCCATCGCCGGAGTTGCTCCGTCAATGAAGCTTGTTTGGGGTCTGAGGATCCGAATTCTGGGTTGGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTATTGCAAAAACGGTACTAGCTGTAGGTTCCTTCATGGAGGAGGAATTGGAGATTCTGATGGCCTTTCACTGGTTGGGTCTCCTAGTAAGATTGAGATGTTGGATCAGAGCAGCCATGAGCTTCTCAGATCTAAAACTGCTCAACAGCAGAGATTGCTCATGGCTTCTTCTTTGCCTTACTCTCCAAAAGGCATGAATTTTCTACTACAACAGCAGCAAAATGATACCCAAAGAGCTGCAGCTGCACTTATGATGAACGAGGATTTGCACAAGTTTGGTCGATCCAGGCTTGAAAGAAACGATTTTTCACTCAATGGAGGTTCTGGAATAGGAAACCCAGCTTCGAGGCAGATCTACTTGACCTTCCCAGCTGATAGTACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCTGTTCAAGATGTGAGGATTCCATACCAGCAGAAGCGAATGTTTGGATTTGTGACCTTTGTTTATCCAGAGACTGTAAAGCTCATTCTGTCAAAGGGAAACCCCCATTTCGTCTGTGATGCTCGCGTGCTAGTCAAGCCTTACAAGGAAAAAGGCAAAGTCCCAGACAAGTACAGGAAACAAGTCGAAAGGGGTGATTTCTCACCATGTGGTACTCCTACTGGACTTGATGCTAGAGATCCTTTTGATCTTCAACTTGGAGGGAGAATGTACTATAATACTCAAGATATGCTGTGGAGGAGGAAGTTGGAGGAGCAAACTGATTTGCAGCAAGCTATTGAGCTCCAAAGTAGGAGGCTCATGGGTCTACAACTTCTTGACATCAAGAAGCAACACCAGAGGGCGTTTTCAACTGGAAGCCCAATTCCTTCCCCTACTCAATCTCCCAACATGTTCAATCAGAATCTTGTTCTCCCTTCATTTCACGGTGGCAGCTCTGAGGCTTCTCTAGAGGAGAGTGTTTTGAGCTCTGCTCCTTCTAGCACGGCACCGATTTCTGTTGCTCAGCAGCCACCAATGCAGCCAAAGGTCAATATTTCTGTTGGCAAAGTGACAACCAATGGCGAGAGTGGAGGTAGAAGTGGCAGTGATGGCAATGGCAAGCAGAGCTCTAGTCATGAAGACTCTAATTTTCAAGAGTGTTTGGAGCATAACCTTCCAGATAGCCCTTTTGCTTCTCCCACAAAAGCTGCTGGAGACTACATGGCTGCCTTCCCCAATGGAGGACCTAACGAGGCCATTGATTCCGATGTCTCAGCTGCATCTACCAACTCAGAATTTGGTACCACAAGTGCATTTCTTCCAGCGCCATCTTCTCTTGACATGGGATCTTTCAAGTCCTTTAACTGTCAGATTCCAAGGTTTACTTCTGGCCATGGAAACATTGAAATGTTTGCCGGCAAGGGTGGACCCATCGCCATTTAG 2139 0.4596 MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVIVKARKNLGLSSYSPSTPSTPTPPPPSSSSPSSFLSRQNSTPSWLSHTGVNFPPPALTIPNSSSSPSWADNLMSPKNNLLVGSNSPHVNVPSPSSSLPFYGSDPIDEFQLQDQLSFLNDGSPTLGRKNPDLFYPQSDLSSSPTDGDATGFPSYGWGGSVHRRSCSVNEACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGGIGDSDGLSLVGSPSKIEMLDQSSHELLRSKTAQQQRLLMASSLPYSPKGMNFLLQQQQNDTQRAAAALMMNEDLHKFGRSRLERNDFSLNGGSGIGNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQVERGDFSPCGTPTGLDARDPFDLQLGGRMYYNTQDMLWRRKLEEQTDLQQAIELQSRRLMGLQLLDIKKQHQRAFSTGSPIPSPTQSPNMFNQNLVLPSFHGGSSEASLEESVLSSAPSSTAPISVAQQPPMQPKVNISVGKVTTNGESGGRSGSDGNGKQSSSHEDSNFQECLEHNLPDSPFASPTKAAGDYMAAFPNGGPNEAIDSDVSAASTNSEFGTTSAFLPAPSSLDMGSFKSFNCQIPRFTSGHGNIEMFAGKGGPIAI 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0207 712 CDD RRM_AtC3H46_like 362 431 IPR034365 -
Lele30g0207 712 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 360 436 IPR000504 GO:0003723
Lele30g0207 712 SUPERFAMILY RNA-binding domain, RBD 372 445 IPR035979 GO:0003676
Lele30g0207 712 Gene3D - 227 296 - -
Lele30g0207 712 MobiDBLite consensus disorder prediction 519 614 - -
Lele30g0207 712 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 635 - -
Lele30g0207 712 SUPERFAMILY CCCH zinc finger 235 257 IPR036855 GO:0046872
Lele30g0207 712 MobiDBLite consensus disorder prediction 65 101 - -
Lele30g0207 712 MobiDBLite consensus disorder prediction 519 615 - -
Lele30g0207 712 SMART rrm1_1 361 431 IPR000504 GO:0003723
Lele30g0207 712 SMART c3hfinal6 234 258 IPR000571 GO:0046872
Lele30g0207 712 MobiDBLite consensus disorder prediction 179 198 - -
Lele30g0207 712 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 417 IPR000504 GO:0003723
Lele30g0207 712 ProSiteProfiles Zinc finger C3H1-type profile. 232 259 IPR000571 GO:0046872
Lele30g0207 712 Gene3D - 300 450 IPR012677 -
Lele30g0207 712 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 257 IPR000571 GO:0046872
Lele30g0207 712 MobiDBLite consensus disorder prediction 84 101 - -
Lele30g0207 712 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 367 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0207 Lele-ChrLele30 2434589 2437550 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0207 30 2434589 2437550 Lele31g0230 31 2356809 2359054 hybridization
Lele30g0207 30 2434589 2437550 Lele32g1183 32 12203171 12205423 hybridization