Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0540 ATGATCTTGTCAGAGAGATCTAAGCACCCAAATCAGAGCAAAAGGGGTATCTGGGAATCTCTCCAATCTCCTAAATCTCGCTGCTTTTCGCCGTCGTTTATATACAGGAGAATGGTGGCCGGAAATGGTCTGTTTTACCCTATTCTGGGTTTTGTTTCCTGTGTGGTTTTCATATTCATGTCTTTTGGAGACTTGAGGCCGAGTTTAAGGGAAGAACCGACATTGTCATTTGTGAAGAGAAATGGGACTCAGTTAATGTTAGATGGCAGACCTTTCTACATCAATGGCTGGAACTCTTACTGGTTCATGGTTCAGTCTGTGGACGAATCTTCCAGACCCAGGGTTCGTGCGATGCTTCAAGCTGGTGCTAAGATGGGTCTCACTGTTTGTAGAACTTGGGCTTTTAATGATGGCGACTACTATGCCCTTCAGATTTCCCCTGGTCGCTTCGATGAGCGAGTTTTTCAGGCCTTGGATTATGTCATAGCCGAAGCAAGGCAAAACGGAATTCGGCTGCTTCTTGCCTTGGTCAATAATTTGCATGCTTATGGTGGGAAGACTCAGTATGTCAAATGGGCATGGGAAGAAGGGATAGGGTTAAGCTCATCCAATGATTCTTTCTTTTATGATCCTTCAATCCGCAGTTATTTCAAGAATTATGTCAAGACTGTTCTGACAAGGAAGAATACTATCACTGGAGTTGAATATAGAAATGATCCCGCCATATTAGGCTGGGAATTAATTAATGAGCCTCGTTGCATGACTGATCCTTCGGGTGACACTCTCCAAGACTGGCTTGAAGAAATGTCTGCTTTTGTCAAATTGATAGACAAGAACCATTTGGTGACTATTGGCCTTGAAGGATTTTATGGTCCTAATGACGCAAAAGGCCCAACTGTCAACCCAGAGGAGTGGGCATCCAGACTCGGATCCGATTTTATTCGCAATTCCGGGATCGCGAATATTGATTTCTCCTCTGTTCATATCTATCCTGACCATTGGTTAAAAACGCATGACTTTGAATTGAACCTGAATTTTGTCACCAAGTGGATGCATTCGCACATTGAAGATGGCGACAAAGAATTGAAGAAGCCTGTTTTGTTCTCTGAATATGGATGGTCAGACTTGATCAAGAACTTTTCGGTATCTGACCGGGAAAGGATGTACAGAACAATTTTGGACGTAATCTACAAATCTGCTAAGAAAAACCAGTCCGGCGCAGGTGCCTTGGTGTGGCAATTCTTGGTAGAAGGAATGAACGAGTTTGAGGATGATTTCTGGATGATCCCATATAAAGGATCATCAACTTATTCTCTATTTCTTGAACAATCATGCAGATTGGGCAAAGTCACAGGATGGACTCAACATGACAGAAGTTTCAAAGAGGCATGTAAGAAAATTTGA 1404 0.4281 MILSERSKHPNQSKRGIWESLQSPKSRCFSPSFIYRRMVAGNGLFYPILGFVSCVVFIFMSFGDLRPSLREEPTLSFVKRNGTQLMLDGRPFYINGWNSYWFMVQSVDESSRPRVRAMLQAGAKMGLTVCRTWAFNDGDYYALQISPGRFDERVFQALDYVIAEARQNGIRLLLALVNNLHAYGGKTQYVKWAWEEGIGLSSSNDSFFYDPSIRSYFKNYVKTVLTRKNTITGVEYRNDPAILGWELINEPRCMTDPSGDTLQDWLEEMSAFVKLIDKNHLVTIGLEGFYGPNDAKGPTVNPEEWASRLGSDFIRNSGIANIDFSSVHIYPDHWLKTHDFELNLNFVTKWMHSHIEDGDKELKKPVLFSEYGWSDLIKNFSVSDRERMYRTILDVIYKSAKKNQSGAGALVWQFLVEGMNEFEDDFWMIPYKGSSTYSLFLEQSCRLGKVTGWTQHDRSFKEACKKI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0540 467 Pfam Cellulase (glycosyl hydrolase family 5) 89 413 IPR001547 GO:0004553|GO:0071704
Lele32g0540 467 ProSitePatterns Glycosyl hydrolases family 5 signature. 243 252 IPR018087 GO:0004553|GO:0005975
Lele32g0540 467 PANTHER - 47 457 IPR045053 GO:0004553
Lele32g0540 467 FunFam Mannan endo-1,4-beta-mannosidase 6 74 451 - -
Lele32g0540 467 Gene3D Glycosidases 75 451 - -
Lele32g0540 467 SUPERFAMILY (Trans)glycosidases 76 441 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0540 Lele-ChrLele32 3340610 3344399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0540 40 464 Glycoside Hydrolase AT2G20680 68.000 0.0 620
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0560 29 3389943 3393599 Lele32g0540 32 3340610 3344399 hybridization
Lele30g0849 30 12556689 12560607 Lele32g0540 32 3340610 3344399 hybridization