Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0560 ATGGTGGCCGGAAATGGTCTGTTTTACCCTATTCTGGGTTTTGTTTCCTGTGTGGTTTTCATATACATGTCTTTTGGAGACTTGAGGCCGAGATTAAGGGAAGAACGGTCATTGTCATTTGTGAAGAGAAATGGGACTCAGTTAATGTTAGATGGCAGACCTTTCTACATCAATGGTTGGAACTCTTACTGGTTTATGGTTCATTCGGTGGACGAATCTTCCAGACCCAGGGTTCGTGCGATGCTTCAATCTGGTGCCAAGATGGGTCTCACTGTTTGTAGAACTTGGGCTTTTAATGATGGCGACTACAATGCCCTTCAGATTTCCCCTGGTCGCTTCGATGAGCGAGTTTTTCAGGCCTTGGATTATGTCATAGCTGAAGCAAGGCAAAATGGAATTCGGCTGCTCCTCGCCTTGGTCAATAACTTGCATGCCTATGGTGGGAAGACTCAATATGTCAAATGGGCATGGGAAGAAGGGATAGGGTTAAGCTCATCCAATGATTCTTTCTTTTATGATCCTTCAATCCGCAGTTATTTCAAGAATTATGTCAAGACTGTTCTGACAAGGAAGAATACTATCACTGGAGTTGAATATAGAAATGACCCCACCATATTAGGCTGGGAATTAATTAACGAACCTCGTTGCATGACTGATCCTTCAGGTGACACTCTCCAAGACTGGCTTGAAGAAATGTCTGCTTTTGTCAAATTGATAGACAAGAACCATTTGGTGACTATTGGCCTTGAAGGATTTTATGGTCCTAATGACCCTAAAGGCCCTTCTGTCAACCCAGAGGAGTGGGCTGCCAGACTCGGATCTGATTTTATTCGCAATTCTGGGATTGTGAATATCGATTTCACCTCTGTTCATATCTATCCTGACCATTGGTTAAAAACGCATGACTTTGAAGTGAACCTGAATTTTGTCACCAAGTGGATGCATTCGCACATTGAAGATAGCGACAAAGAATTGAAGAAGCCTGTGCTGTTCTCTGAATATGGGTGGTCAGACTTGATCAAGAACTTTTCCGTATCTGACCGTGAAAGGATGTACCGAACAATTTTGGATATAATCTACAAATCTGCTAAGAAAAACCGGTCGGGCGCTGGTGCCTTGGTGTGGCAATTCTTAGTAGAAGGAATGAACGAGTTTGAGGATGATTTCTGGATGATCCCATATAAAGGATCATCAACTTATTCTCTATTCCAGGACCAATCATGCAGATTGGGCAAAGTCACAGGATGGACTCAACATGACACAAGTTTCAAAGAGTCATGTAAGAAAATTTGA 1293 0.4261 MVAGNGLFYPILGFVSCVVFIYMSFGDLRPRLREERSLSFVKRNGTQLMLDGRPFYINGWNSYWFMVHSVDESSRPRVRAMLQSGAKMGLTVCRTWAFNDGDYNALQISPGRFDERVFQALDYVIAEARQNGIRLLLALVNNLHAYGGKTQYVKWAWEEGIGLSSSNDSFFYDPSIRSYFKNYVKTVLTRKNTITGVEYRNDPTILGWELINEPRCMTDPSGDTLQDWLEEMSAFVKLIDKNHLVTIGLEGFYGPNDPKGPSVNPEEWAARLGSDFIRNSGIVNIDFTSVHIYPDHWLKTHDFEVNLNFVTKWMHSHIEDSDKELKKPVLFSEYGWSDLIKNFSVSDRERMYRTILDIIYKSAKKNRSGAGALVWQFLVEGMNEFEDDFWMIPYKGSSTYSLFQDQSCRLGKVTGWTQHDTSFKESCKKI 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0560 430 FunFam Mannan endo-1,4-beta-mannosidase 6 37 414 - -
Lele29g0560 430 SUPERFAMILY (Trans)glycosidases 39 402 IPR017853 -
Lele29g0560 430 ProSitePatterns Glycosyl hydrolases family 5 signature. 206 215 IPR018087 GO:0004553|GO:0005975
Lele29g0560 430 Pfam Cellulase (glycosyl hydrolase family 5) 54 376 IPR001547 GO:0004553|GO:0071704
Lele29g0560 430 Gene3D Glycosidases 38 414 - -
Lele29g0560 430 PANTHER - 9 419 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0560 Lele-ChrLele29 3389943 3393599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0560 3 427 Glycoside Hydrolase AT2G20680 68.000 0.0 620
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0560 29 3389943 3393599 Lele31g0983 31 16997484 17005124 hybridization
Lele29g0560 29 3389943 3393599 Lele32g0540 32 3340610 3344399 hybridization