Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0849 ATGATCTTTTCAGAGAGATCTAAGTACCCAAATCAGAGCAAAAAGGGTATCTGGGAATCTCTCCAATCTCCTAAATCTCGCTGCTCTTCGCCGTCGTTTATATACAGAAGAATGGTGGCCGGAAATGGTCTGTTTTACCCTATTCTGGGTTTTGTTTCCTGTGTGGTTTTCATATACATGTCTTTTGGAGACTTGAGGCCGAGTTTAAGGGAAGAACAGACATTGTCATTTGTGAAGAGAAATGGGACTCAGTTAATGTTAGATGGCAGACCTTTCTACATCAATGGCTGGAACTCTTACTGGTTTATGGTTCAGTCTGTGGACGAATCTTCCAGACCCAGGGTTCGTGCGATGCTTCAAGCTGGTGCCAAGATGGGTCTCACTGTTTGTAGAACTTGGGCTTTTAATGATGGCGACTACTATGCCCTTCAGATTTCCCCTGGTCGCTTCGATGAGCGAGTTTTTCAGGCCTTGGATTATGTCATAGCCGAAGCAAGGCAAAACGGAATTCGGCTGCTTCTTGCCTTGGTCAATAACTTGCATGCTTATGGTGGGAAGACTCAGTATGTCAAATGGGCATGGGAAGAAGGGATAGGGTTAAGCTCATCCAATGATTCTTTCTTTTATGATCCTTCAATCCGCAGTTATTTCAAGAATTATGTCAAGACTGTTCTGACAAGGAAGAATACTATCACTGGAGTTGAATATAGAAATGATCCCGCCATATTAGGCTGGGAATTAATTAATGAACCTCGTTGCATGACTGATCCTACGGGTGACACTCTCCAAGACTGGCTTGAAGAAATGTCTGCTTTTGTCAAATTGATAGACAAGAACCATTTGGTGACTATTGGCCTTGAAGGATTTTATGGTCCTAATGACCCAAAAGGCCCTACTGTCAACCCAGAGGAGTGGGCATCCAGACTCGGATCGGATTTTATTCGCAATTCCAGGATCGCGAATATCGATTTCTCCTCTGTTCATATCTATCCTGACCATTGGTTAAAAACGCATGACTTTGAATTGAACCTGAATTTTGTCACCAAGTGGATGCATTCGCACATTGAAGACGGCGACAAAGAATTGAAGAAGCCTGTTTTGTTCTCTGAATATGGATGGTCAGACTTGATCAAGAACTTTTCGGTATCTGACCGGGAAAGGATGTACAGAACAATTTTGGACATAATCTACAAATCTGCTAAGAAAAACATGTCCGGCGCAGGTGCCTTGGTGTGGCAATTCTTGGTAGAAGGAATGAACGAGTTTGAGGATGATTTCTGGATGACCCCATATAAAGGATCATCAACTTATTCTCTATTTCTTGAACAATCATGCAGATTGGGCAAAGTCACAGGGTGGACTCAACATGACAGAAGTTTGAAAGAGGCACGTAAGAAAATTTGA 1404 0.4266 MIFSERSKYPNQSKKGIWESLQSPKSRCSSPSFIYRRMVAGNGLFYPILGFVSCVVFIYMSFGDLRPSLREEQTLSFVKRNGTQLMLDGRPFYINGWNSYWFMVQSVDESSRPRVRAMLQAGAKMGLTVCRTWAFNDGDYYALQISPGRFDERVFQALDYVIAEARQNGIRLLLALVNNLHAYGGKTQYVKWAWEEGIGLSSSNDSFFYDPSIRSYFKNYVKTVLTRKNTITGVEYRNDPAILGWELINEPRCMTDPTGDTLQDWLEEMSAFVKLIDKNHLVTIGLEGFYGPNDPKGPTVNPEEWASRLGSDFIRNSRIANIDFSSVHIYPDHWLKTHDFELNLNFVTKWMHSHIEDGDKELKKPVLFSEYGWSDLIKNFSVSDRERMYRTILDIIYKSAKKNMSGAGALVWQFLVEGMNEFEDDFWMTPYKGSSTYSLFLEQSCRLGKVTGWTQHDRSLKEARKKI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0849 467 Gene3D Glycosidases 75 451 - -
Lele30g0849 467 ProSitePatterns Glycosyl hydrolases family 5 signature. 243 252 IPR018087 GO:0004553|GO:0005975
Lele30g0849 467 Pfam Cellulase (glycosyl hydrolase family 5) 89 413 IPR001547 GO:0004553|GO:0071704
Lele30g0849 467 PANTHER - 46 456 IPR045053 GO:0004553
Lele30g0849 467 FunFam Mannan endo-1,4-beta-mannosidase 6 74 451 - -
Lele30g0849 467 SUPERFAMILY (Trans)glycosidases 76 441 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0849 Lele-ChrLele30 12556689 12560607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0849 40 452 Glycoside Hydrolase AT2G20680 69.249 0.0 619
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0849 30 12556689 12560607 Lele31g0983 31 16997484 17005124 hybridization
Lele30g0849 30 12556689 12560607 Lele32g0540 32 3340610 3344399 hybridization