Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0427 ATGGCTAAGAGTTCATTCAAGATGGAACACCCCCTTGAAAGGAGGCAGGCGGAAGCTGCTCGCATCAGAGAAAAGTATCCTGATAGAATACCGGTGATCGTTGAAAGGGCTGAAAAGAGTGACGTTCCTGAAATTGATAAGAAAAAGAAAGTATTGGCATATCTTAACTTGCTCTTACGTTTTCTTGTTATGATAATAGTACCTCCTGATGCCTTGACCCCTTTGAGTTTTGAGAGGTATCTGGTTCCTGCTGATCTGACTGTTGGACAGTTTGTGTATGTTGTGAGAAAGAGAATCAAGCTGAGTCCTGAGAAGGCCATCTTTATCTTCGTCAAGAACATTTTACCTCCGACTGCTGCGATGATGTCTGCAATTTACGAGGAAAATAAGGATGAAGATGGGTTCCTGTACATGACTTACAGCGGGGAGAACTCGTTCGGGATGATGGAATAA 453 0.4305 MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKKVLAYLNLLLRFLVMIIVPPDALTPLSFERYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENSFGMME 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0427 150 Pfam Autophagy protein Atg8 ubiquitin like 72 147 IPR004241 -
Lele32g0427 150 Pfam Autophagy protein Atg8 ubiquitin like 14 52 IPR004241 -
Lele32g0427 150 Gene3D - 1 148 - -
Lele32g0427 150 CDD Ubl_ATG8 12 144 - -
Lele32g0427 150 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 148 IPR004241 -
Lele32g0427 150 SUPERFAMILY Ubiquitin-like 3 147 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0427 Lele-ChrLele32 2704366 2706183 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0445 29 2709591 2712908 Lele32g0427 32 2704366 2706183 hybridization
Lele30g0960 30 13236473 13239912 Lele32g0427 32 2704366 2706183 hybridization