Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0960 ATGGCTGCGAAATCTTACTTTATACCTGGCTCAACAAATTCTCAAGTTGGTTGGCATAATTTATTGACTGAACATTCCGGAATTGCATTGAAGTGGTGGAGCAGGCAGAGAAGGGCCCGCAATTGGGGAAATAAGGTGATTGTACGGATGGCTGATCAGACAAGCCATGATGTCTCCAAGGGATTGTCGAAAGATTTAATCTCGCTTCCAAAACCATTGTCTGTGTCTGATATTTTGACCGCTGCTGATAATGGTGCAGAAGTTCGAATATCATTCAAGGGGGTACCAGGTTCATACAGTGAGGATGCAGCACTTAAAGCCTACCATCATTGTGAGACAGTTCCATGCGGAGATTTTGAAGCTGCTTTTAAGGCTGTTGAATTATGGATTGCCGACAAAGTTATCATTCCCATTGGAAACACTTCAGGGGGAAGCCTCCATCGAAACTATGATTTACTTCTTCGCCATAGGCTGCACATCGTTGGTGAGGTGCAGCTGGCTATTAATTTCTGCCTTCTTGCTCTGCCTGGAGTCAGAGCAGATTACTTAGAACGTGTTTTAAGCCATCCCCAGGCACTTGATCTTAGTGATGCCTTCCTTACTAAATTAAATGTTACTAGAGAAAGTGTTGATGATACTGCAAGTGCTGCTGAGTATGTAGCTTCAAATGGCCTGAACAAAGCTGGTGTGATTGCAAGTCGTCGAGCTGCAGAAATCTATGGGCTTAATGTACTTGCAGAAAGAATCCAAGATGATCCTGAAATTATCAGTCGTTATCTAATTCTTGCAAGGGATCCAATAATTCCGAGAGCTGATAAGCCGTTTAAGACAAGCATAGTGTTTAGTTTGGACGAGGGTCCTGGGGTATTGTTTAAGGCATTGGCGGTGTTCGCATTGAGGGACATCAATTTAAGTAAGATTGAAAGTCGACCACAAAGAAATCGACCGTTAAGAGTGGTTGATGACTCTAACACTGGAACTGCCAAGTATTTTGATTACCTTTTCTATATTGATTTTGAGGCTTCTATGGCTGAGCCCCGGGCACAAACTGCTCTAGCACATATGCAGGAATTCACCACATTCATTCGAGTTCTGGGCTGCTATCCGATGGATGCAACCATATAG 1125 0.4338 MAAKSYFIPGSTNSQVGWHNLLTEHSGIALKWWSRQRRARNWGNKVIVRMADQTSHDVSKGLSKDLISLPKPLSVSDILTAADNGAEVRISFKGVPGSYSEDAALKAYHHCETVPCGDFEAAFKAVELWIADKVIIPIGNTSGGSLHRNYDLLLRHRLHIVGEVQLAINFCLLALPGVRADYLERVLSHPQALDLSDAFLTKLNVTRESVDDTASAAEYVASNGLNKAGVIASRRAAEIYGLNVLAERIQDDPEIISRYLILARDPIIPRADKPFKTSIVFSLDEGPGVLFKALAVFALRDINLSKIESRPQRNRPLRVVDDSNTGTAKYFDYLFYIDFEASMAEPRAQTALAHMQEFTTFIRVLGCYPMDATI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0960 374 FunFam Arogenate dehydratase 271 372 - -
Lele30g0960 374 ProSiteProfiles ACT domain profile. 278 369 IPR002912 -
Lele30g0960 374 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 33 373 - -
Lele30g0960 374 CDD PBP2_Ct-PDT_like 88 266 - -
Lele30g0960 374 CDD ACT_CM-PDT 276 369 - -
Lele30g0960 374 FunFam Arogenate dehydratase 170 252 - -
Lele30g0960 374 ProSitePatterns Prephenate dehydratase signature 2. 304 311 IPR018528 GO:0004664|GO:0009094
Lele30g0960 374 Gene3D - 83 171 - -
Lele30g0960 374 Gene3D - 172 252 - -
Lele30g0960 374 ProSiteProfiles Prephenate dehydratase domain profile. 89 264 IPR001086 GO:0004664|GO:0009094
Lele30g0960 374 Pfam Prephenate dehydratase 90 266 IPR001086 GO:0004664|GO:0009094
Lele30g0960 374 SUPERFAMILY Periplasmic binding protein-like II 89 270 - -
Lele30g0960 374 Gene3D - 271 372 - -
Lele30g0960 374 SUPERFAMILY ACT-like 260 370 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0960 Lele-ChrLele30 13236473 13239912 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0960 30 13236473 13239912 Lele31g1097 31 17734172 17736578 hybridization
Lele30g0960 30 13236473 13239912 Lele32g0427 32 2704366 2706183 hybridization