Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0201 ATGGTACGATCCAACCCCATGTGTCGTCCACCGTCCATGGCTGATTCTCTCTCTCCCTCTCCCTCCTCTATAACCACCGCCACCACCACTCTCCACCATCCCTCCGCCCTCGGTCTCACTGTTCTCGTCTCCGCCATTGTCTGCATTTTCCTCTGCGCCCTCGGCCCCAACACCATGCTCCACTGCGTCTTCCAATCCGCCGTCACTGAACCTTTGCAATGGATTGCCTCTCGCGGAATCAGTTCTGGCCTGAAGAAGAAAGACATGTTCGCCTTTTCTACTTCCACTTATTCCGCCAACCCCATGTCTTGTTCCTCTTCTGCTTATAATTCATCTACTACAACTTCTGCTTCTAATTGTGCGATTTCCTTGGCCGATTTCAGCGAAGTTTGTAGATCTCGCCGGAGGTGGAGGGAGGAGCGTGGATGCGAAAACGTCTCTCTTTCTCTCTCTAAGATACTCTTTGAACTTGAAAGAGCAAGAAGACAGAAGATTTGCCAGCTCACGAACATGAAAGACCGGAGATGGAAGAGGAGAAGGTCGTCGACAACTTTGATAGTTGTTAACGTTTTCAGATTTATTTCTTGGAGGAGAGGAGAGGAAAGGAAAGAGTTGGAGGCCGTCGTTGCTGTAGGATATGGTCTTTGCCGCCACACTGGTGTCATCGTTGATAGTGGGGTGAGGGAGAAACTCAATGCCGGCAAAGCTAGTGAGTTTGATTGCAGGAGGACAAAACGGAAGCTTTACTTGACAGTGAAAAATATGTATTCTTTTGGTAGAAATTGCTTGAAACATGGTAGCTGCTCCGCGAGAAATTTTTTGAATCATCTGTGCTTTGCAAACTCATTTTGGCAGCGATTTCATGAATCAGCTGTGCTCAATGTTCCCATTGAACAAACTTCTAAGAAGATTACTCTTTATGAGACTCATAAAATTGAACCATTTTTCCAAATCTCCTCTAAAAAAACTCCAACCCTGCGCGCACCCTCTTGCATTGCTTCTCATTATTCAACCAAGCCACCTTCAAGGTCATTTCGAAGAAGAGCTCGTAAGAGACTGTTAAAATCCTTGAAGCCTACTCTAGATCAAGCCCAATTCCAACTGGCATTGTCCCAACTTTCCCCAAGGTTTACTCCTGAAGAACTCTGTAATGTTATTACTTTTCAAGAAGACCCATTAGTTTGCTTGGAGCTCTTTAATTGGGCATCACAACAATCCAGGTTTCGGCACAACGCTAACACTTATCACATAACCATCCAGAAGCTCGGTGCAGCACAAATGTACCAAGAAATGGATGATATTGTCAATCAAGTGCTTGCAGTGCCATTAATTTGTTCAGAGGCACTTTACAATACTATAATATATTATTTCACAGAAGCTCGAAAGTTGACTCGAGCTGTCAATATATTTAACCACATGAAAAGTAGCAGAAATTTGAATTGCAAGCCTTCTATCAGAACCTATAATATCCTTTTTGCGGCACTGTTGAGCAGAGGAAGCAACTCTTATATAAATCATGCGTATATGGACACTATTAGATGTCTGTTTAGGCAAATGGTCAACGATGGGATAGAGCCTGATATATTTTCTGTAAATTCCATGATTAAAGGTTATGTGCTCTCTCTCCATCTTAATGATGCGTTGAGGATATTCCATCAGATGGGTGTGGTTTATGCTTGCAAGCCTAACTCATTCACCTATGATTATTTGATACACGGCTTATGTGCTCAAGGAAGAACGAAGAATGCTATAGAGATATGCAATGAAATGAAGACTGAAGGCTTCACCCCAAGTAGTAAATCTTATAACTCACTTGTCAATGCTTTGGCACTTGGTGGAGAGATTGAGGAAGCAGTAAAATATCTGTGGGAGTTGATTGAAAATCAGAGGTCGGCTGATTTTATTACATATAGGACTGTACTGGATGAGATATGTAGAAAAGGAAGAGTTCAGGAGGCAATGAGGTTATTGCATGAGTTTCAAGAGAAGGACCTTGTGGATGGGCATGCTTACAGAAAACTTCTTTATGTGCTGGAAGATGACTATGGGAATTCAGCTAGCAGAGTTGATTCAGGAGTATTCCACAACAGCAGTGTTGCTCATGGCACGATTGAAGGTGATGAAAGCAATTCCCAGAAAAATGGTGATGTAAAGTTAAACTTTATCACTTCTTCCCACATTTTGCCAAGTGAAGTGAATATGACCTTTAATTTGGCACTTGGTGGAGAGATTGAGGAAGCAGTAAAATATCTGTGGGAGTTGATTGAAAATCAGAGGTCGGCTGATTTTATTACATATAGGACTGTACTGGATGAGATATGTAGAAAAGGAAGAGTTCAGGAGGCAATGAGGTTATTTATTTTACTGCTGAAGTGA 2376 0.4242 MVRSNPMCRPPSMADSLSPSPSSITTATTTLHHPSALGLTVLVSAIVCIFLCALGPNTMLHCVFQSAVTEPLQWIASRGISSGLKKKDMFAFSTSTYSANPMSCSSSAYNSSTTTSASNCAISLADFSEVCRSRRRWREERGCENVSLSLSKILFELERARRQKICQLTNMKDRRWKRRRSSTTLIVVNVFRFISWRRGEERKELEAVVAVGYGLCRHTGVIVDSGVREKLNAGKASEFDCRRTKRKLYLTVKNMYSFGRNCLKHGSCSARNFLNHLCFANSFWQRFHESAVLNVPIEQTSKKITLYETHKIEPFFQISSKKTPTLRAPSCIASHYSTKPPSRSFRRRARKRLLKSLKPTLDQAQFQLALSQLSPRFTPEELCNVITFQEDPLVCLELFNWASQQSRFRHNANTYHITIQKLGAAQMYQEMDDIVNQVLAVPLICSEALYNTIIYYFTEARKLTRAVNIFNHMKSSRNLNCKPSIRTYNILFAALLSRGSNSYINHAYMDTIRCLFRQMVNDGIEPDIFSVNSMIKGYVLSLHLNDALRIFHQMGVVYACKPNSFTYDYLIHGLCAQGRTKNAIEICNEMKTEGFTPSSKSYNSLVNALALGGEIEEAVKYLWELIENQRSADFITYRTVLDEICRKGRVQEAMRLLHEFQEKDLVDGHAYRKLLYVLEDDYGNSASRVDSGVFHNSSVAHGTIEGDESNSQKNGDVKLNFITSSHILPSEVNMTFNLALGGEIEEAVKYLWELIENQRSADFITYRTVLDEICRKGRVQEAMRLFILLLK 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0201 791 Gene3D Tetratricopeptide repeat domain 342 502 IPR011990 GO:0005515
Lele32g0201 791 Gene3D Tetratricopeptide repeat domain 503 722 IPR011990 GO:0005515
Lele32g0201 791 Pfam PPR repeat 764 788 IPR002885 -
Lele32g0201 791 Pfam PPR repeat 530 554 IPR002885 -
Lele32g0201 791 PANTHER ATPASE EXPRESSION PROTEIN 3 738 786 - -
Lele32g0201 791 Pfam PPR repeat 633 659 IPR002885 -
Lele32g0201 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Lele32g0201 791 TIGRFAM PPR: pentatricopeptide repeat domain 565 598 IPR002885 -
Lele32g0201 791 TIGRFAM PPR: pentatricopeptide repeat domain 635 665 IPR002885 -
Lele32g0201 791 MobiDBLite consensus disorder prediction 1 25 - -
Lele32g0201 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 762 791 IPR002885 -
Lele32g0201 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 667 IPR002885 -
Lele32g0201 791 Pfam PPR repeat family 562 610 IPR002885 -
Lele32g0201 791 Pfam PPR repeat family 449 495 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0201 Lele-ChrLele32 1223932 1227841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0201 430 786 Glycosyltransferase AT1G05670 27.072 9.39e-30 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0214 29 1246869 1250006 Lele32g0201 32 1223932 1227841 hybridization
Lele30g1195 30 14741096 14743428 Lele32g0201 32 1223932 1227841 hybridization