Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0214 ATGAGAAATATTTTTAATCCTATATGCTTTGCAAACTCATTTTGGCAGCGATTTCAAGAATCAGCTGTGCTCAATAGTCCCATTGAACAAAATTCTAAGAAGATTACTCTTTATGAGACTCATAAAATTGAACCCTTTTTTCAAATCCCTTCTAAAAGAACTCCAGCCCCGCTTGCACCCTCTTGCGTTGCTTCTCATTATTCAACCAAGCCACCTTCAAGGTCATTTCGAAGAAGAGCTCGTAAGAGACTGTTAAAATCCTTGAAGCGTACTCTAGATCAAGCCCAATTTCAATTGGCCTTGTCCCAACTTTCCCCAAGGTTTCGGCACAACGCCAACACTTATCACATAACCATACAGAAGCTCGGTGCAGTACAAATGTACCAAGAAATGGACGATATTGTCAATCAAGTGCTTGCGGTTCCATTAATTTGTTCAGAGGCACTTTACAATACTATAATATATTATTTCACAGAAGCTCGAAAGTTGACGCGAGCTGTCAATATATTTAACCACGTGAAAAGTAGCAGAAATATAAATTGCAAGCCTTGTATCAGAACCTATAATGTCCTTTTCGTGGCACTGTTGAGCAGAGGAAGCAACTCTTGTATAAATCATGCGTATATGGACCCTATTAGATGTCTGTTTAAGCAAATGGTCAACGATGGGATAGAGCCTGATATATTTTCTTTAAATTCCATGATTAAAGGTTATGTGCTTTCTCTCCATGTTAATGATGCGCTGAGGATATTCTATCAGATGGGTGTGGTTTATGCTTGCAAGCCTAACTCATTTACCTATGATTATTTGATCCACGGCTTGTGTGCGCAAGGAAGAACGAAGAATGCTATAGAGATATGCTATGAAATGAAGACTGGAGGCTTCACCGCAAGTAGCAAATCTTATAACTCACTTGTCAATGCTTTGGCACTTGGTGGAGAGATCGAGGAAGCAGTAACTTATCCGTGGGAGATGACTGAAAATCAGAGGTCGGCTGATTTTATTACATATAGGACTGTACTGGATGAGATATGTAGACAAGGAAGAGTTCAGGAGGCAATGAGGTTCTTGCAGGAGTTTCAAGAGAAGGAGCTTGTGGATGGGCATGCTTACAGAAAGCTTCTTTATGTGCTGGAAGATGACTATGGGAATTCAGTTAGCAGAGTTGATCCAGGAGAATTCCACAACAGCACTGTTGCTCATGGCAGGATTGAGGGTGATGAAAGCAATTCTCAGAAGAATGATGATGAGGAACCACAATTTGGAAGAACAGTGATGCAAATGTGGTACAAAACAGTATCCTCTGACCCACCAAAAAATAAAAGTCCCATTGATCCCAAGGTGCAGAATATGCTGAAAGAATGTTGGCTTACGTGGAAGCAAGCATTTACGACTAATGACTCTGAGCCTCTGACTAATTCTACCTCTAATTCAACCTCCTTCGATTGGAAATCTTTTTCTCAGTTTGGTTAA 1473 0.4026 MRNIFNPICFANSFWQRFQESAVLNSPIEQNSKKITLYETHKIEPFFQIPSKRTPAPLAPSCVASHYSTKPPSRSFRRRARKRLLKSLKRTLDQAQFQLALSQLSPRFRHNANTYHITIQKLGAVQMYQEMDDIVNQVLAVPLICSEALYNTIIYYFTEARKLTRAVNIFNHVKSSRNINCKPCIRTYNVLFVALLSRGSNSCINHAYMDPIRCLFKQMVNDGIEPDIFSLNSMIKGYVLSLHVNDALRIFYQMGVVYACKPNSFTYDYLIHGLCAQGRTKNAIEICYEMKTGGFTASSKSYNSLVNALALGGEIEEAVTYPWEMTENQRSADFITYRTVLDEICRQGRVQEAMRFLQEFQEKELVDGHAYRKLLYVLEDDYGNSVSRVDPGEFHNSTVAHGRIEGDESNSQKNDDEEPQFGRTVMQMWYKTVSSDPPKNKSPIDPKVQNMLKECWLTWKQAFTTNDSEPLTNSTSNSTSFDWKSFSQFG 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0214 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Lele29g0214 490 Pfam Pentatricopeptide repeat domain 150 192 IPR002885 -
Lele29g0214 490 Gene3D Tetratricopeptide repeat domain 204 290 IPR011990 GO:0005515
Lele29g0214 490 Gene3D Tetratricopeptide repeat domain 58 203 IPR011990 GO:0005515
Lele29g0214 490 Gene3D Tetratricopeptide repeat domain 291 366 IPR011990 GO:0005515
Lele29g0214 490 Pfam PPR repeat 335 363 IPR002885 -
Lele29g0214 490 Pfam PPR repeat 301 320 IPR002885 -
Lele29g0214 490 Pfam PPR repeat family 226 275 IPR002885 -
Lele29g0214 490 TIGRFAM PPR: pentatricopeptide repeat domain 265 296 IPR002885 -
Lele29g0214 490 TIGRFAM PPR: pentatricopeptide repeat domain 335 365 IPR002885 -
Lele29g0214 490 PANTHER ATPASE EXPRESSION PROTEIN 3 84 366 - -
Lele29g0214 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0214 Lele-ChrLele29 1246869 1250006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0214 223 402 Glycosyltransferase AT1G05670 24.309 1.20e-09 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0214 29 1246869 1250006 Lele31g1336 31 19314622 19316987 hybridization
Lele29g0214 29 1246869 1250006 Lele32g0201 32 1223932 1227841 hybridization