Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1195 ATGTATTCTTTTGGTAGAAATTGCTTGAAACATGGTAGCTGCTCCGCAAGAATTTTTTTGAATCATCTGTTCTTTGCAAACTCATTTTGGCAGCGATTTCATGAATCAGCTGTGCTCAATGGTCCCATTGAACAAACTTCTAAGAAGATTACTCTTTATGAGACTCATAAAATTGAACCATTTTTCCAAATCTCTTCTAAAACAACTCCAACCCTGCGCGCACCCTATTGCGTTGCTTCTCATTATTCAACCAAGCCACCTTCAAGGTCATTTCGAAGAAGAGCTCGTAAGAGACTGTTAAAATCCTTGAAGCCTACTCTAGATCAAGCCCAATTCCAATTGGCATTGTCCCAACTTTCCCCAAGGTTTACTCCTGAAGAACTCTGTAATGTTATTACTTTTCAGGAAGACCCATTAGTTTGCTTGGAGCTCTTTAATTGGGCATCACAACAACCCAGGTTTCGGCACAACGCCAACACTTATCACATAACCATCCAGAAGCTCGGTGCAGCACAAATGTACCAAGAAATGGATGATATTGTCAATCAAGTGCTTGCAGTTCCATTAATTTGTTCAGAGGCACTTTACAATTCTATAATATATTATTTCACTGAAGCTCGAAAGTTAACTCGAGCTGTCAATATATTTAACCACATGAAAAGTAGCAGAAATTTGAATTGCAAGCCTTCTATCAGAACCTATAATATCCTTTTTGCGGCACTGTTGAGCAGAGGAAGCAACTCTTATATAAATCATGCGTATTTGGACACTATTAGATGTCTGTTTAGGCAAATGGTCAACGATGGGATAGAGCCTGATATATTTTCTGTAAATTCCATGATTAAAGGTTATGTGCTTTCTCTCCATCTTAATGATGCGTTGAGGATGTTCCATCAGATGGGTGTGGTTTATGCTTGCAAGCCTAACTCATTCACCTATGATTATTTGATACACGGCTTGTGTGCTCAAGGAAGAACGAAGAATGCTATAGAGATATGCAATGAAATGAAGACTGAAGGCTCTACCCCAAGTAGTAAATCTTATAACTCACTTGTCAATGCTTTGGCACTTGGTGGAGAGATTGAGGAAGCAGTAAAATATCTGTGGGAGTTGATTGAAAATCAGAGGTCGGCTGATTTTATTACATATAGGACTGTACTGGATGAGATATGTAGACAAGGAAGAGTTCAGGAGGCAATGAGGTTATTGCATGAGTTTCAAGAGAAGGACCTTGTGGATGGGCATGCTTACAGAAAACTTCTTTATGTGCTGGAAGATGACTATGGGAATTCAGTTAGCAGAGTTGATCCAGGAGTATTCCACAACAGCACTGTTTTTCATGGCAGGATTGAAGATGATGAAAGCAATTCCCAGAAAAATGAGTTGAGAGCCCATCCTACTTTTGACTGGAAAAGTTGCAGTTTTATTCATGGCAAGATTGAATATTGCCTTGATATGAGCTTCTCAGGAGGATGCAAAATTTGGAAGAACGGTGATGTGCAAGTGTGGTACAAAACGATTAGTATTCTCTGA 1533 0.3927 MYSFGRNCLKHGSCSARIFLNHLFFANSFWQRFHESAVLNGPIEQTSKKITLYETHKIEPFFQISSKTTPTLRAPYCVASHYSTKPPSRSFRRRARKRLLKSLKPTLDQAQFQLALSQLSPRFTPEELCNVITFQEDPLVCLELFNWASQQPRFRHNANTYHITIQKLGAAQMYQEMDDIVNQVLAVPLICSEALYNSIIYYFTEARKLTRAVNIFNHMKSSRNLNCKPSIRTYNILFAALLSRGSNSYINHAYLDTIRCLFRQMVNDGIEPDIFSVNSMIKGYVLSLHLNDALRMFHQMGVVYACKPNSFTYDYLIHGLCAQGRTKNAIEICNEMKTEGSTPSSKSYNSLVNALALGGEIEEAVKYLWELIENQRSADFITYRTVLDEICRQGRVQEAMRLLHEFQEKDLVDGHAYRKLLYVLEDDYGNSVSRVDPGVFHNSTVFHGRIEDDESNSQKNELRAHPTFDWKSCSFIHGKIEYCLDMSFSGGCKIWKNGDVQVWYKTISIL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1195 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Lele30g1195 510 Gene3D Tetratricopeptide repeat domain 250 439 IPR011990 GO:0005515
Lele30g1195 510 Pfam PPR repeat 276 300 IPR002885 -
Lele30g1195 510 Gene3D Tetratricopeptide repeat domain 88 249 IPR011990 GO:0005515
Lele30g1195 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Lele30g1195 510 Pfam PPR repeat family 195 241 IPR002885 -
Lele30g1195 510 Pfam PPR repeat family 308 356 IPR002885 -
Lele30g1195 510 Pfam PPR repeat 379 405 IPR002885 -
Lele30g1195 510 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Lele30g1195 510 TIGRFAM PPR: pentatricopeptide repeat domain 381 411 IPR002885 -
Lele30g1195 510 TIGRFAM PPR: pentatricopeptide repeat domain 311 344 IPR002885 -
Lele30g1195 510 PANTHER ATPASE EXPRESSION PROTEIN 3 99 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1195 Lele-ChrLele30 14741096 14743428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1195 150 454 Glycosyltransferase AT1G05670 27.869 3.27e-28 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1195 30 14741096 14743428 Lele31g1336 31 19314622 19316987 hybridization
Lele30g1195 30 14741096 14743428 Lele32g0201 32 1223932 1227841 hybridization