Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1515 ATGAATAACGATGACCGCATCCACAGCAGGCGGGAAGAAGATCAAAGCACCCCAGATGGTACCGTCACAAGCCAAGACTCCAGATTCAGTCAGACCCTCAGGAACGTTCAAGGCTTGCTGAAAGGTCGTAGCATCCCTGGTAAAATATTGTTGACCCGGAGACTAGACCCGCTAGATAACTCAAACTCAAAGGAATATTCGCCAAGATATGAAAGGAGCTTCTCCTTCAATGATGCTGTCACAAGTGATCACCCAGTCAAGGCTGCAGAGGAAGAAGTCCAGAGTACAAGTGAACCAGTCAGTGTTGCCAATGTAAATAAGTTAAAAAAATCAAGTTCTGACATGGATAACTCATCTGAAGAAGTCCAGAAACCTTTCATGGGCGCAAGAGCTACAGACTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCTGGGTCGACGGTAATATTAGAGAAGTTGCGTGAATTATCTTGGAGTGGAGTTCCAGATTACATGCGCCCTACAGTGTGGAGGCTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTCTGAGAAGAAAGCGCCTGGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACACAACGTTCAGATGATGAGATTAACATGCTTCGCCAGATTGCTGTTGATTGTCCAAGAACTGTACCTGATGTTTCATTCTTCCAGCAACCACAAGTTCAGAAATCATTGGAGCGCATTCTTTATACATGGGCCATTCGGCATCCTGCAAGTGGATACGTTCAGGGAATTAATGATCTTGTCACACCGTTTTTAGTTGTTTTCCTATCAGAATACTTAGAAGGGAGTATAGACAATTGGTCAATGTCTGAATTATCCTCGGATAAAATTTCTAATGTAGAGGCTGACTGTTATTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTACACATTCGCTCAACCAGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGAAGAATAGATGAGCCTGTTTCTAGACATGTGGAGGAACAAGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTTATCCGTGAGATACCCTTCCATCTCATCACACGCCTTTGGGACACATATCTTGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATTTGCGAGTTTTCTTCTGACGTGGTCAGATAAGCTCCAGAAGCTTGATTTCCAAGAGCTGGTAATGTTCCTTCAACACCTACCAACTCAAAACTGGTCTCACCAAGAGCTTGAGATGGTGCTCTCTCGCGCCTTCATGTGGCACAGCATGTTCAACAACTCCCCCAGCCATTTAGCTAGCTAA 1377 0.4379 MNNDDRIHSRREEDQSTPDGTVTSQDSRFSQTLRNVQGLLKGRSIPGKILLTRRLDPLDNSNSKEYSPRYERSFSFNDAVTSDHPVKAAEEEVQSTSEPVSVANVNKLKKSSSDMDNSSEEVQKPFMGARATDSARVMKFTKVLSGSTVILEKLRELSWSGVPDYMRPTVWRLLLGYAPPNSDRREGVLRRKRLEYLDCVSQYYDIPDTQRSDDEINMLRQIAVDCPRTVPDVSFFQQPQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGSIDNWSMSELSSDKISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHVEEQGLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQELVMFLQHLPTQNWSHQELEMVLSRAFMWHSMFNNSPSHLAS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1515 458 FunFam TBC domain containing protein 323 458 - -
Lele31g1515 458 Pfam Rab-GTPase-TBC domain 165 409 IPR000195 -
Lele31g1515 458 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 140 348 IPR035969 -
Lele31g1515 458 SMART tbc_4 158 414 IPR000195 -
Lele31g1515 458 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 197 322 - -
Lele31g1515 458 MobiDBLite consensus disorder prediction 1 30 - -
Lele31g1515 458 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 324 446 IPR035969 -
Lele31g1515 458 Gene3D - 323 458 - -
Lele31g1515 458 FunFam TBC1 domain family member 135 187 - -
Lele31g1515 458 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 111 431 - -
Lele31g1515 458 FunFam TBC domain containing protein 191 322 - -
Lele31g1515 458 MobiDBLite consensus disorder prediction 1 17 - -
Lele31g1515 458 ProSiteProfiles TBC/rab GAP domain profile. 161 388 IPR000195 -
Lele31g1515 458 Gene3D - 138 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1515 Lele-ChrLele31 20369504 20375144 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0027 29 174617 182878 Lele31g1515 31 20369504 20375144 hybridization
Lele30g1365 30 15824709 15835184 Lele31g1515 31 20369504 20375144 hybridization