Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0027 ATGCCTAAGCTTTTGGCTCAGCGGGATGAGGAAGAGAGAGAACTTTTGGTAAGTACATGTCCCTGGAAGCATCTCTTACTAGTGGCCCTGGAATTAGCATCAAGCACCGCTAGTAGTGCTGGCAGAGCAACCATGAATAACGATGGCCGCATCCACAGCAGGCGGGAAGAAGATCGAAGCACCCCAGATAGTACCGTCACAAGCCAAGACTCCAGATTCAGTCAGACCCTCAGGAATGTTCAAGGCTTGCTGAAAGGTCGTAGCATCCCTGGTAAAATATTGTTGACCCGGAGACTAGACCCGCTAGATAACTCGAACTCAAAGGAATATTCGCCAAGATATGAAAGGAGCTTCTCCTTCAATGATGCTGTCACAAGTGATCACCCAGTCAAGGCTGCAGAGGAGGAAGTCCACAGTACAAGTAAACCAGTCAGTGTTGCCAATGTGAATAAGTTAAAAAAATCAAGTTCTGACATGGATAACTCATCTGAAGAAGCCCAGAAACCTTTCATGGGCGCAAGAGCTACAGACTCTGCAAGAGTTATGAAGTTCAGTAAGGTGCTTTCTGGGTCGACGGTAATATTAGAGAAGTTGCGTGAATTATCTTGGAGTGGAGTTCCAGATTACATGCGCCCTACAGTGTGGAGGCTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGACGGAGTTCTGAGAAGGAAGCGCCTGGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTCATACACAACGTTCAGATGATGAGATTAACATGCTTCGCCAGATTGCTGTTGATTGTCCCAGAACTGTACCTGATGTTTCATTCTTCCAGCAACCACAAGTTCAGAAATCATTGGAGCGCATTCTTTATACATGGGCCATTCGGCATCCTGCAAGTGGATACGTTCAGGGAATTAATGATCTTGTCACACCGTTTTTAGTTGTTTTCCTATCAGAATACTTAGAAGGGAGTATAGACAATTGGTCAATGTCTGATTTATCCTCGGATAAAATTTCTAATGTAGAGGCTGATTGTTATTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTACACATTCGCTCAACCAGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGAAGAATAGATGAGCCTGTTTCTAGACATGTGGAGGAACAAGAACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTTATCCGTGAGATACCCTTCCATCTCATCACACGCCTTTGGGACACATATCTTGCTGAAGGAGATGCCTTACCGGACTTCCTTGTGTATATATTTGCGAGTTTTCTTCTGACGTGGTCAGATAAGCTCCAGAAGCTTGATTTCCAAGAGCTGGTAATGTTCCTTCAACACCTACCAACTCAAAACTGGTCTCACCAAGAGCTTGAGATGGTGCTCTCTCGCGCCTTCATGTGGCACAGCATGTTCAACAACTCCCCCAGCCATTTAGCTAGCTAA 1509 0.446 MPKLLAQRDEEERELLVSTCPWKHLLLVALELASSTASSAGRATMNNDGRIHSRREEDRSTPDSTVTSQDSRFSQTLRNVQGLLKGRSIPGKILLTRRLDPLDNSNSKEYSPRYERSFSFNDAVTSDHPVKAAEEEVHSTSKPVSVANVNKLKKSSSDMDNSSEEAQKPFMGARATDSARVMKFSKVLSGSTVILEKLRELSWSGVPDYMRPTVWRLLLGYAPPNSDRRDGVLRRKRLEYLDCVSQYYDIPHTQRSDDEINMLRQIAVDCPRTVPDVSFFQQPQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGSIDNWSMSDLSSDKISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHVEEQELEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQELVMFLQHLPTQNWSHQELEMVLSRAFMWHSMFNNSPSHLAS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0027 502 FunFam TBC domain containing protein 367 502 - -
Lele29g0027 502 ProSiteProfiles TBC/rab GAP domain profile. 205 432 IPR000195 -
Lele29g0027 502 SMART tbc_4 202 458 IPR000195 -
Lele29g0027 502 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 188 392 IPR035969 -
Lele29g0027 502 MobiDBLite consensus disorder prediction 37 73 - -
Lele29g0027 502 Gene3D - 182 233 - -
Lele29g0027 502 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 241 366 - -
Lele29g0027 502 MobiDBLite consensus disorder prediction 48 63 - -
Lele29g0027 502 FunFam TBC domain containing protein 235 366 - -
Lele29g0027 502 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 368 490 IPR035969 -
Lele29g0027 502 Pfam Rab-GTPase-TBC domain 209 453 IPR000195 -
Lele29g0027 502 Gene3D - 367 502 - -
Lele29g0027 502 FunFam TBC1 domain family member 179 231 - -
Lele29g0027 502 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 153 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0027 Lele-ChrLele29 174617 182878 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0027 29 174617 182878 Lele31g1515 31 20369504 20375144 hybridization
Lele29g0027 29 174617 182878 Lele32g0027 32 185547 191437 hybridization