Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1365 ATGAATAACGATGACCACATCCACAGCAGGCGGGAAGAAGATCAAAGCACCCCAGATATTACCGTCACAAGCCAGGACTCCAGATTCAGTCAGACCCTCAGGAATGTTCAAGGCTTACTGAAAGGTCGCAGCATCCCTGGTAAAATATTGTTGACCCGGAGACTAGACCCGCTAGATAACTCAAACTCGCCAAGATATGAAAGGAGCTTCTCCTTCGATGATGTTGGCACAAGTGATCACCCAGCTAAGGCGGCAGAGGAAGAAGTCCAGAGTACAAGTAAACCAGTCAGTGTTGCCAATGTGAATAAGTTAAAAAAATCAAGTTCTGACATGGATAACTCATCTGAAGAAGTCCAGAAACCTTTCATGGGTGCAAGAGCTACAGACTCTGCGAGAGTTATGAAGTTCACTAAGGTGCTTTCTGGGTCGACGGTAATATTAGAGAAGTTGCGTGAATTATCTTGGAGTGGAGTTCCAGATTACATGCGCCCTACCGTATGGAGGCTTCTCTTGGGATATGCACCTCCTAATTCAGATAGAAGGGAGGGAGTTCTGAGAAGGAAGCGCCTGGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACACAACGTTCAGATGATGAGATTAACATGCTTCGCCAGATTGCCGTTGATTGTCCAAGAACTGTACCTGATGTTTCATTCTTCCAGCAACCACAAGTTCAGAAATCATTGGAGCGCATTCTTTATGCATGGGCCATTCGGCATCCTGCAAGTGGATATGTTCAGGGAATTAATGATCTTGTCACACCGTTTTTAGTTGTTTTCCTATCAGAATACTTAGAAGGGAGTATAGACAATTGGTCAATGCCTGATTTATCCTCGGATAAAATTTCTAATGTAGAGGCTGATTGTTATTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTACACATTCGCTCAACCAGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGAAGAATAGATGAGCCTGTTTCTAGACATGTGGAGGAACAAGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTTATCCGTGAGATACCCTTCCATCTCATCACACGCCTTTGGGACACATATCTTGCTGAAGGAGATGCCTTACCGGACTTCCTTGTGTATATATTTGCCAGTTTTCTTCTGACGTGGTCAGATAAGCTCCAGAAGCTTGATTTCCAAGAGCTGGTAATGTTCCTTCAACACCTTCCAACTCAAAACTGGTCTCACCAAGAGCTTGAGATGGTGCTCTCTCGCGCCTTCATGTGGCACAGCATGTTCAACAACTCTCCCAGCCATTTAGCTAGCTAA 1365 0.4403 MNNDDHIHSRREEDQSTPDITVTSQDSRFSQTLRNVQGLLKGRSIPGKILLTRRLDPLDNSNSPRYERSFSFDDVGTSDHPAKAAEEEVQSTSKPVSVANVNKLKKSSSDMDNSSEEVQKPFMGARATDSARVMKFTKVLSGSTVILEKLRELSWSGVPDYMRPTVWRLLLGYAPPNSDRREGVLRRKRLEYLDCVSQYYDIPDTQRSDDEINMLRQIAVDCPRTVPDVSFFQQPQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGSIDNWSMPDLSSDKISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHVEEQGLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQELVMFLQHLPTQNWSHQELEMVLSRAFMWHSMFNNSPSHLAS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1365 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 320 442 IPR035969 -
Lele30g1365 454 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 109 427 - -
Lele30g1365 454 FunFam TBC1 domain family member 131 183 - -
Lele30g1365 454 Pfam Rab-GTPase-TBC domain 161 405 IPR000195 -
Lele30g1365 454 MobiDBLite consensus disorder prediction 1 23 - -
Lele30g1365 454 FunFam TBC domain containing protein 187 318 - -
Lele30g1365 454 Gene3D - 134 185 - -
Lele30g1365 454 MobiDBLite consensus disorder prediction 55 95 - -
Lele30g1365 454 Gene3D - 319 454 - -
Lele30g1365 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 136 344 IPR035969 -
Lele30g1365 454 SMART tbc_4 154 410 IPR000195 -
Lele30g1365 454 FunFam TBC domain containing protein 319 454 - -
Lele30g1365 454 MobiDBLite consensus disorder prediction 1 17 - -
Lele30g1365 454 ProSiteProfiles TBC/rab GAP domain profile. 157 384 IPR000195 -
Lele30g1365 454 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 193 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1365 Lele-ChrLele30 15824709 15835184 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1365 30 15824709 15835184 Lele31g1515 31 20369504 20375144 hybridization
Lele30g1365 30 15824709 15835184 Lele32g0027 32 185547 191437 hybridization