Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1474 ATGTCTTCTTCAACCGCCACTAGCGGCTACGGCTCCTCTGACCCCCTCCCCACACCCACATTAGACCGCCAGTCTTCCGCTCTCCTCCACTCCATTTCCCAGCATGGAGGCTATGCTTACGTCAGCATGGCCGCCCTCGCCATCCTCGGCGACTTCCGAGCTGCCGAAGCTGCCCGTGAGATGGCCTCGGAGCAGCTACACTCTGGGCCTCGGCACTCCGTCCTCCCAGTTTGGCTCGACGCCTACTCCATGGCGTGTCTTTACGTAGCCAAGCACCATTACATCAACTGCGAGTTCAAGGAGGCTCTTAGGGCTTTGGATATGGGACTTATCATGGGGGGATCTCTTCTAAAGAAAGACTTGAGCTCTGCTGCTGACAAAGTATCGGAGAGGCTCTGGAACATTAGGGCCTCCAAAGAAAGCCTCGAAGTCTTCGGGATGTCTGAGCATCGACTTGTCAGTCATGAACTCAACCGGTCCGATGTGCACAAACTTCTGCCCTTCAACTCTCTTTCTCATAAAATCGTGGAGAAGAGGTCTGATCTGTCATTGGAAAGGTTCCTAGAAGATTATTATCGGTCTGGCTCCCCGGTTATCATCAGTGATTGTATGGCTCACTGGCCAGCCAAGACAAAATGGAATAAAATAGATTATTTGGAAAAAGTTGCTGGTGATCGCACGATTCCGGTTGAGGTTCGGAAGAGCTATTTATGTGAAAAGGGGAAGCAAGAGTTAATTATATTTTCAGAGTTTCTTCGGCGTATAGAGTCCCATGGCTGCTCTTCTGTCGGTCCTACGTATCTTGCTCAGCATCCACTATTTGATCAGGTTGTTGGGAAGAAATATGTAAGGCTCTACCCTCCATCTGTGTCTAAGGAACTTTACCCTTACACTGAAACAATGCTTATGAATTCCAGCCAGAATGTGATCAAGGCTAGTAGCCCAAACTTATATGAATCCGACAGAGTGGTTCAATGTGGTATGCTTTCCAAGTTTCCTATAACTGCAAATAACATAGATGAAAAGATGTTGCCTGGGTTGCAAGACTTGGGATTCGTAGACTGTATATTAGAGGAGGGTGAATTGCTATATATCCCGCAAAAGTGGTGCCACTATGTCCGCTCGCTAACTACAAGTTTCTCCGTTAGTTTTTGGTGGAGTAAGGCCCAAGTCCTAGAGCAAATTCTATGCGCCACCTCGTCTTTATCTTGTTTACTTCCTGCACTCAAATATGAACACATCGCCTCTAATAAAACAATGTATGCCTCTGCAAATATTTTCATAGGACCGTCAAACATGGTTACATATGTACTCATCATATGGAATGGAACGTTTTAG 1338 0.4701 MSSSTATSGYGSSDPLPTPTLDRQSSALLHSISQHGGYAYVSMAALAILGDFRAAEAAREMASEQLHSGPRHSVLPVWLDAYSMACLYVAKHHYINCEFKEALRALDMGLIMGGSLLKKDLSSAADKVSERLWNIRASKESLEVFGMSEHRLVSHELNRSDVHKLLPFNSLSHKIVEKRSDLSLERFLEDYYRSGSPVIISDCMAHWPAKTKWNKIDYLEKVAGDRTIPVEVRKSYLCEKGKQELIIFSEFLRRIESHGCSSVGPTYLAQHPLFDQVVGKKYVRLYPPSVSKELYPYTETMLMNSSQNVIKASSPNLYESDRVVQCGMLSKFPITANNIDEKMLPGLQDLGFVDCILEEGELLYIPQKWCHYVRSLTTSFSVSFWWSKAQVLEQILCATSSLSCLLPALKYEHIASNKTMYASANIFIGPSNMVTYVLIIWNGTF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1474 445 Gene3D Cupin 274 395 - -
Lele31g1474 445 Gene3D Cupin 174 273 - -
Lele31g1474 445 SUPERFAMILY Clavaminate synthase-like 176 396 - -
Lele31g1474 445 ProSiteProfiles JmjC domain profile. 217 401 IPR003347 -
Lele31g1474 445 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 271 393 - -
Lele31g1474 445 Pfam Cupin-like domain 186 265 IPR041667 -
Lele31g1474 445 Pfam Cupin-like domain 273 388 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1474 Lele-ChrLele31 20101746 20105773 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0074 29 439418 445954 Lele31g1474 31 20101746 20105773 hybridization
Lele30g1321 30 15553503 15557088 Lele31g1474 31 20101746 20105773 hybridization